ZRdb KZFP & Repeats
...

LTR_MER4B

  • Name
    MER4B
  • Repbase
    MER4B
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000797
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaaaccaaaaataaaattctaagccccccaaccatctgaatggacccctcctctcggccaagggcattccaaagttaacctgaaaaactggttcaggccatgatgggaagngggggtcggacatgcctcattataccctcctcccttttggaattcaggnanagccgaccagcattaacatcaacacagaccttaagtctgataagaaacatttacaatctattctctctgaagcctgctacctggaggcttcatctgcatgataaaaccttggtctccacaaccccttatcgtaacccagacattcctttctattgataataactctttcaaccaattgccaatcagaaaatctttaaatctacctatgacctggaagcccccgcttcgagttgtcccgcctttccggaccgaaccaatgtacatcttacatgtattgattgatgtctcatgtctccctaaaatgtataaaaccaagctgtaccccgaccaccttgggcacatgttctcaggacctcctgaggctgtgtcacgggcgcgtccttaaccttggcaaaataaactttctaaattgattgagacctgtctcagatacttttgggttcaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 58 43.0 Weakly correlated
2 ZNF382 40 99.0 Weakly correlated
3 ZNF589 22 28.9 Weakly correlated
4 ZNF680 18 28.9 Weakly correlated
5 ZNF175 17 94.0 Weakly correlated
6 ZNF695 15 28.9 Weakly correlated
7 ZNF394 14 99.0 Weakly correlated
8 ZNF679 14 28.9 Weakly correlated
9 ZNF197 13 99.0 Weakly correlated
10 ZNF701 13 28.9 Weakly correlated
11 ZNF2 12 99.0 Weakly correlated
12 ZKSCAN8 12 160.0 Weakly correlated
13 ZNF705B 10 28.9 Weakly correlated
14 ZNF479 10 6.4 Weakly correlated
15 ZNF584 8 99.0 Weakly correlated
16 ZFP69B 7 99.0 Weakly correlated
17 ZNF324 7 99.0 Weakly correlated
18 ZNF263 7 180.0 Weakly correlated
19 ZNF18 7 160.0 Weakly correlated
20 ZNF705D 7 28.9 Weakly correlated
21 ZNF251 6 94.0 Weakly correlated
22 ZNF723 6 15.2 Weakly correlated
23 ZNF101 6 43.0 Weakly correlated
24 ZNF558 6 99.0 Weakly correlated
25 ZNF257 5 0.0 Weakly correlated
26 ZNF28 5 28.9 Weakly correlated
27 ZNF75D 5 94.0 Weakly correlated
28 ZKSCAN1 5 160.0 Weakly correlated
29 ZFP37 5 99.0 Weakly correlated
30 ZNF534 4 19.6 Weakly correlated
31 ZNF506 4 28.9 Weakly correlated
32 ZNF248 4 99.0 Weakly correlated
33 ZNF528 3 43.0 Weakly correlated
34 ZNF793 3 99.0 Weakly correlated
35 ZNF92 3 28.9 Weakly correlated
36 ZNF140 3 99.0 Weakly correlated
37 ZNF490 2 43.0 Weakly correlated
38 ZIM3 2 87.0 Weakly correlated
39 ZNF823 2 43.0 Weakly correlated
40 ZNF133 2 99.0 Weakly correlated
41 ZNF765 2 8.6 Weakly correlated
42 ZNF735 2 28.9 Weakly correlated
43 ZNF707 2 74.0 Highly correlated
44 ZNF182 2 99.0 Weakly correlated
45 ZNF610 2 28.9 Weakly correlated
46 ZNF519 2 19.6 Weakly correlated
47 ZNF554 2 99.0 Weakly correlated
48 ZNF141 1 43.0 Weakly correlated
49 ZNF486 1 8.6 Weakly correlated
50 ZNF91 1 6.0 Weakly correlated
51 ZNF8 1 99.0 Weakly correlated
52 ZNF878 1 43.0 Weakly correlated
53 ZNF483 1 99.0 Weakly correlated
54 ZNF124 1 43.0 Weakly correlated
55 ZNF786 1 99.0 Weakly correlated
56 ZNF468 1 28.9 Weakly correlated
57 ZNF530 1 28.9 Weakly correlated
58 ZNF75A 1 94.0 Weakly correlated
59 ZNF445 1 99.0 Weakly correlated
60 ZNF560 1 43.0 Weakly correlated
61 ZNF160 1 74.0 Highly correlated
62 ZNF17 1 69.0 Moderately correlated
63 ZNF41 1 99.0 Weakly correlated
64 ZNF189 1 99.0 Weakly correlated
65 ZNF273 1 28.9 Weakly correlated
66 ZNF284 1 43.0 Weakly correlated
67 ZNF559 1 74.0 Highly correlated
68 ZNF605 1 99.0 Weakly correlated
69 ZNF317 1 99.0 Weakly correlated
70 ZNF320 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 13 43.0 Weakly correlated
2 ZNF589 5 28.9 Weakly correlated
3 ZNF723 4 15.2 Weakly correlated
4 ZNF479 3 6.4 Weakly correlated
5 ZNF257 3 0.0 Weakly correlated
6 ZNF263 3 180.0 Weakly correlated
7 ZNF197 3 99.0 Weakly correlated
8 ZNF248 3 99.0 Weakly correlated
9 ZNF175 3 94.0 Weakly correlated
10 ZNF680 3 28.9 Weakly correlated
11 ZNF707 2 74.0 Highly correlated
12 ZNF534 2 19.6 Weakly correlated
13 ZNF75D 2 94.0 Weakly correlated
14 ZNF382 2 99.0 Weakly correlated
15 ZNF320 1 28.9 Weakly correlated
16 ZNF141 1 43.0 Weakly correlated
17 ZNF735 1 28.9 Weakly correlated
18 ZNF701 1 28.9 Weakly correlated
19 ZNF584 1 99.0 Weakly correlated
20 ZNF41 1 99.0 Weakly correlated
21 ZNF506 1 28.9 Weakly correlated
22 ZNF18 1 160.0 Weakly correlated
23 ZNF695 1 28.9 Weakly correlated
24 ZIM3 1 87.0 Weakly correlated
25 ZNF28 1 28.9 Weakly correlated
26 ZNF605 1 99.0 Weakly correlated
27 ZNF528 1 43.0 Weakly correlated
28 ZNF2 1 99.0 Weakly correlated
29 ZNF559 1 74.0 Highly correlated
30 ZNF468 1 28.9 Weakly correlated
31 ZNF140 1 99.0 Weakly correlated
32 ZNF133 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats