ZRdb KZFP & Repeats
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LTR_MER4B-INT

  • Name
    MER4B-INT
  • Repbase
    MER4BI
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000798
Description :

MER4B-int is flanked by MER4B and LTR39 LTRs. Primate-specific. Notethat MER stands for MEdium Reiteration frequency interspersed repeat. Assuch, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ataatttggcgcccaaacacgtggggcctcagagaagactcaggaccccgaaggagttgcccgaacccggagctaaggtaccagcaggggcccattgaagcctccccgacttcgagcttctcctccggtggaactggtaagtcctcctgagccccggacctccctttggttgacggtccttgatttattctgagctgttttttttttctcctaggaagttgttgtttaggatcctaattctagttcggaggtgcattctaaagggtcttctccattgctttttctcccaaaattaatctcgattcggcttgtctgtgcgcatttgcgtgaggaactgaactgttgttttcataggtaaatgagagactgagttttctcagctccgaagagaaagggcattttgctcctcccagccgaaaggcgcccctgggtgaccgggggcctcgtgggagtgtctggggggttgaccccccgcgacgtgcagcggccctacagggaaatccccaacaaaaattagtttaaaaaggctcgtccaggaaacgcatataagggctgatcacccggcgttttgagccctctcggaggtnatagacctctggagagagaaactgagacacgtaagagggcggaaacgactcagtggtgacacactgtggagtcctgcccacaagcagcacacatcgatccaccacacaaaaaccctaggccacagctcagttcctccttttaagaaaagtgggaaacaaataatctaagaatgaggagaaaacaaggagaatgaccccctttcgggcactccgtnggttttatggcacctctacttgccagagtttgtgtaaaatggaagggcatgccaggttttctaatactccggctggttacatatttggtcttcttgtgcacattttaaactgatgngcaaattacattaaggaaaannnagagccctaaggtcgacctgcaaactatagagttcctaagttctctttttctctattttcttttctgcctgctttaaatctgctgttacttttctactgagataaaaaccactgtttggatccaacnntttttttgtttttttgcaagccggtgaatttgtattaatatctcatggctagagttctgaagtaaaagctataggatctttgtgtgtgtgngtgtgtatgtgtgtgtttatgtgtacgtacacgtattttgttatgtgttttggccacaaggtaccaaattggcttaaagagtactcataaattaaataataagcccaaatgcttttcaagttcacgtgacttaagtaaaatctttaataaactggctttaaaanttattggtaaagtaatattagaaatgtcttaagaattgtcagcatttttgtgcatttattgatcaagttttcatacttatgaaatattataggtgtnaaattggcataagttagaaatgtctagaattgtcaattttgtttgcatttattgatcaagcggtttcatacttatccctgcngaatactataaggtgtcaaaatttgncatgagggttataaaactataaacccagcccaaaacagaatgatctttgcttgtgtaatttttgataaataagacatttaatattgttggtttaatgaaaacagctaaatcctgagttattggcaaaatacccatatatttaaccttaagnttcttacttaggtaaacacctgaaattcacaggctataaaaatggttaacagggaaataactttaaatgatgactatcacagttttcataaataatctaggtaaactattaaataaataattaggtaaatgtaatggaataaatgcttgtaaacaaacttgtcataatttagaatctaaagttatattaaataatagtattattaaatgtctgggtaatttccaattaaaaattataggaaaacatttttaaaaatgtgttcttattaaaaggtaaatantttttgtctaattcaaaggttatntataaaacaaggtaaaaggaaccaggaaataaagagatgtaaagaaagttatagatataaagaggtatttttggtaagaaaggttaaaagaaaaataattttatatgagaaagaatcttgtatggtaaatttttgtcctaaaataaaatgactggnttgtttaagaaagagggatgtttaggacaaaacagaaagtccaagcatgtcgtgaatggtctgtgtaagtcgtaataaggttagtaaaaaaggaatttntaaaaangttgtatgattaagttggctataattaaaaggaaattataatagtctttctagagattgggctttgatattaaaaatacactaatacaaaactaaagaattggttagaacaagattttacgnttaaaaatattgacttactcttaatgcaagaagtttttaatttttaaattctataatctgtttctttttgaaattcttcagattgatatctcagaagttcaactcctgctgcttcagtctttctctcttttgaaaaggcctgggatgataactctctccttcaccttttgtcggctcctgtaacttttnttaattaatagtctaaagtaagggagagaatttttgaaaacaggcaaatgaaaaatcttttggacctgcctttttattctgcatgcctgttatatctatatgtttatatgtgtcatgtggaagtgatatttcactaccaaactatatgaaagagctctaatcaattggcttaaagaaagtaagtgcttatcagactggtagaagctagctcagatgccttttagttcacatgactttggtaatctttggtaagattaatttggtaaatttaatctcaaaattctctccagtaatttaaaatcttaaagtcatgttatgttaaattaagtaaccccgggttttttcactgggaatttgggttactaagagttaaaatagtaggagngtaaaatgtgtttttggtgaagtttataaaacacaaggatgtggtttttgctaaagaaaatgtatttttttctagttnagagactatttaagagtcgctttaaaatgaaggaaaaaattatacagataaaactaaatggataaagagaaaaataaaagggtggggaatgagaaacctttgattcctgggtggccacgtggtcacccatggtatggagctgcagctgggctgcattcagttactaaaggtaaaagttaccagtggaatttagagatggatccaactcccggggagttggttcactggatgcataaggaaatgcaaactaataaggaaaaagcgaaatattcaatcccttggttattgttatctgtaatagctaaaatgaaagtaaaagagtgctgggttgggccttgaggctggaccaagctcagatgtgggtctgtctgagctcaggccactagcctcaaagctacccacaaaaggaaaaattaagccagggcaacaaaagttacctctgagacctgtggttaccaagaagatagtcaatgtgggggaagggcaaaaccaagtaactattaaaaccagagggtataatgtaaaggaattgttccattttgtagattggtatcatcagcttcctgagaaacctttactataatggattgtaaaaataaccactttaaggacagnatccttaattttaaatgctacagaatgnaagagcntgtttgggttgatgcaggacccacagctcactattgaacaatcgctgatgagtatatgtgatccaaacgcacaggaggttattcctgagagaacaaccagcctagtggaccggataaatgccactgtaaggtctgtttgccctgagaaggggactgcccaactctccctataaaatgccaagtggagcaccccagatgaagcagctgatatgcttcatatgcaagccatgtgggactggctttatgatgaccgggatattctcccaccgaatatgcctattacccaggtcatggtaaatnttggggttaagggggccccttttacatgggcgccccgngtgacgttactcccgcagaatcatacgactgtttgagaagccttatcaaatttgctgtccctcatgggtcttacagatgcttaataaaacattagggtaattaacaaaaaaaaaatggaaaggcaaaagggagtcaaaggactcgtcccagaagggtggaaatctttagatggttattaagaaatgaaatgaataaaatgaaaattgatggggttaaaacaaaggtctttacaacactatcgaaggttgggtggaccaaagggagcccctgctggtcccccaacattaaagggccccaaaccagttttctgcatttgccccagattggagaaatttaagaaaaatcaaaaggcaaaggttataatgagaaagctgacattgcctggggcaatgttgaggcaaattaagataaagattgacaaaagggcctgagtcccttggctcaactccctgctgggaacccaaatcctttttcaccagaaaaggtaaaatggtctgggggtagaaaagaaaagttcctgggaccagaacataaaaacgtanaggttgatagaattatgaaatttgagatgtttaaacaggctttatgtaaggtagttgtgacccctttacctaaatgtcttatgaaaatgggtactgtatctgactgggggatgtttcccctntctagtactataaaactgaaggcatgtaaatctgccctttgagaaatgttaattggacacgctaaatgggaactagtaagattgcctgagcccacagagtatagggtagaagctggagtgctagtcgggacaaatcctccacttcatagccctttgtggagcatttatcggggctnatggcaaaagcctgtgagtacttcccaatgacaacgactgaactagagaatttccacttgaggggcatttactgccttgctatggaatgttaactgaagctacccctatgctaatggaaataatggtgcccaaaagagttccatgataaaataaaaatggtttacataggatcttgctacctggggatgcaaggaggagatactcataagcagggagcctcttttcccctaggactgactctaactatgtgaggagctgctagattctacagtgcctgatagacagctctcatctgacaagagctgcttggcttgtgaatggcagttccaaggtgaacaaacaacatcttgtttggaaggctgctgctctggttaaagaagggtcaagaaaatctttttcttttgagttatttatagtttagagcanttgggtaaagtatgtttttgtgagcaaatttacctttctctctanctgagttctccaaaattcggattgtgattttatgacaatatagttatttgcataagttcagtaagagtcttttttttaaaacaggacaattggagacactggttattttaccaaggctttgactagaatagcatatttttaggtaaagttccagcaaagccaacttaaaaggagcctatatggccaatcaattcttgctgcactttatgcaaataatcaggccaagtataataagcctaaaacttattttgcacacaaattggtcttactataatttctctttagtagaaaaggagggctagagagagaaaaattgtttcaaaggaaaagtgtaacacttgntactagatttcagccctgacttttgtttttgagtgcagattgaatcatgaattatttcttggctacaataatcctctagagagtaccagattataatttttcttcatatttttagttggcgccctaatggaataggttcctttttctgttctgacacacaaattctcttttgattgtcaaantattaatgttatttatctctccttgttttacttccaaggaaaccaaaatcatggtattctgaagaccagagatgcgaatctccctcatttggcatcccactgggcccgatctgtttttcactgcnaatgccctgctgctaaaactatacaagcaccctccctctaggcccagggactatcgcggaagaggtgggcgcgtgagattgtaagggccggttttgagggatagaattagntcaagntcagaccctccaaatcaaggangggtacanagatgcctaaacagctggtaaaacaagggactttgccttctgagctattatgtgncacctttncatccaccccaaccataaagaattttctgcttcctatagaattaaaagaaaatanttactganaggataaagatacctcgtgacaaagcctcctgggtataatactcccagttatgagtttgtgnagataaatatatnttaaaaaatttttatcagcttaggatacaanaaaaaancactatcttaaattncttttaaaaaacaatgcttatgttttgtatagctaattgctataagtctgtaactaaaaccaagattacagtagctcaacgcatagaagttaaagataagtcagttttgtaacctcgcctttggctttttgtttgttggctttttacttaaaataataattttaaggggtaatgaatgcctgtccacgtccattcctatctggcctagaacatttaattggctataagtcttttgactctaagtccctcggccatagggagtcccaccgagggacaggatggacccggggcaggcagccacgccaccccggcaacgctatgggacaaaataaaagtttggtggccattgatgttgcctctggcaaatcttggccagaagggggagaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 51 99.0 Highly correlated
2 ZNF766 35 43.0 Weakly correlated
3 ZNF680 25 28.9 Weakly correlated
4 ZNF394 21 99.0 Highly correlated
5 ZNF679 19 28.9 Weakly correlated
6 ZNF18 17 160.0 Weakly correlated
7 ZNF558 13 99.0 Highly correlated
8 ZNF589 13 28.9 Weakly correlated
9 ZFP37 13 99.0 Highly correlated
10 ZNF324 12 99.0 Highly correlated
11 ZNF479 12 6.4 Weakly correlated
12 ZNF793 12 99.0 Highly correlated
13 ZNF610 12 28.9 Weakly correlated
14 ZNF2 11 99.0 Highly correlated
15 ZNF175 11 94.0 Moderately correlated
16 ZNF486 11 8.6 Weakly correlated
17 ZKSCAN8 10 160.0 Weakly correlated
18 ZNF274 10 99.0 Highly correlated
19 ZNF101 9 43.0 Weakly correlated
20 ZNF28 9 28.9 Weakly correlated
21 ZNF554 7 99.0 Highly correlated
22 ZNF490 7 43.0 Weakly correlated
23 ZIM3 7 87.0 Moderately correlated
24 ZNF723 7 15.2 Weakly correlated
25 ZNF705B 6 28.9 Weakly correlated
26 ZNF317 6 99.0 Highly correlated
27 ZNF534 6 19.6 Weakly correlated
28 ZNF417 6 28.9 Weakly correlated
29 ZNF263 5 180.0 Weakly correlated
30 ZNF92 5 28.9 Weakly correlated
31 ZNF587 5 28.9 Weakly correlated
32 ZNF141 5 43.0 Weakly correlated
33 ZNF43 5 43.0 Weakly correlated
34 ZNF707 5 74.0 Weakly correlated
35 ZNF549 5 87.0 Moderately correlated
36 ZKSCAN1 5 160.0 Weakly correlated
37 ZNF257 4 0.0 Weakly correlated
38 ZFP69B 4 99.0 Highly correlated
39 ZNF735 4 28.9 Weakly correlated
40 ZNF320 4 28.9 Weakly correlated
41 ZNF182 4 99.0 Highly correlated
42 ZNF197 4 99.0 Highly correlated
43 ZNF584 3 99.0 Highly correlated
44 ZNF528 3 43.0 Weakly correlated
45 ZNF519 3 19.6 Weakly correlated
46 ZNF705D 3 28.9 Weakly correlated
47 ZNF485 3 94.0 Moderately correlated
48 ZNF506 3 28.9 Weakly correlated
49 ZNF133 3 99.0 Highly correlated
50 ZNF264 3 99.0 Highly correlated
51 ZNF716 2 19.6 Weakly correlated
52 ZNF730 2 19.6 Weakly correlated
53 ZNF682 2 28.9 Weakly correlated
54 ZNF251 2 94.0 Moderately correlated
55 ZNF75D 2 94.0 Moderately correlated
56 ZNF641 2 99.0 Highly correlated
57 ZNF26 2 99.0 Highly correlated
58 ZNF597 2 94.0 Moderately correlated
59 ZNF284 2 43.0 Weakly correlated
60 ZNF30 2 94.0 Moderately correlated
61 ZNF585A 2 99.0 Highly correlated
62 ZNF334 2 99.0 Highly correlated
63 ZNF418 2 43.0 Weakly correlated
64 ZNF878 2 43.0 Weakly correlated
65 ZNF8 2 99.0 Highly correlated
66 ZNF792 1 94.0 Moderately correlated
67 ZNF789 1 99.0 Highly correlated
68 ZFP69 1 99.0 Highly correlated
69 ZNF816 1 28.9 Weakly correlated
70 ZIK1 1 87.0 Moderately correlated
71 ZNF823 1 43.0 Weakly correlated
72 ZNF84 1 99.0 Highly correlated
73 ZNF136 1 74.0 Weakly correlated
74 ZFP57 1 87.0 Moderately correlated
75 ZNF140 1 99.0 Highly correlated
76 ZNF169 1 94.0 Moderately correlated
77 ZNF250 1 99.0 Highly correlated
78 ZNF700 1 28.9 Weakly correlated
79 ZNF671 1 94.0 Moderately correlated
80 ZNF669 1 43.0 Weakly correlated
81 ZNF605 1 99.0 Highly correlated
82 ZNF585B 1 99.0 Highly correlated
83 ZNF333 1 99.0 Highly correlated
84 ZNF560 1 43.0 Weakly correlated
85 ZNF433 1 43.0 Weakly correlated
86 ZNF547 1 74.0 Weakly correlated
87 ZNF440 1 28.9 Weakly correlated
88 ZNF441 1 43.0 Weakly correlated
89 ZNF44 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 8 28.9 Weakly correlated
2 ZNF793 8 99.0 Highly correlated
3 ZNF479 5 6.4 Weakly correlated
4 ZNF723 5 15.2 Weakly correlated
5 ZNF587 4 28.9 Weakly correlated
6 ZNF28 4 28.9 Weakly correlated
7 ZNF735 4 28.9 Weakly correlated
8 ZNF417 4 28.9 Weakly correlated
9 ZNF679 4 28.9 Weakly correlated
10 ZIM3 4 87.0 Moderately correlated
11 ZNF141 3 43.0 Weakly correlated
12 ZNF534 3 19.6 Weakly correlated
13 ZNF485 3 94.0 Moderately correlated
14 ZNF101 3 43.0 Weakly correlated
15 ZNF257 2 0.0 Weakly correlated
16 ZNF705B 2 28.9 Weakly correlated
17 ZNF589 2 28.9 Weakly correlated
18 ZNF43 2 43.0 Weakly correlated
19 ZNF263 2 180.0 Weakly correlated
20 ZNF264 2 99.0 Highly correlated
21 ZNF317 2 99.0 Highly correlated
22 ZNF558 2 99.0 Highly correlated
23 ZNF133 2 99.0 Highly correlated
24 ZNF197 2 99.0 Highly correlated
25 ZNF433 1 43.0 Weakly correlated
26 ZNF490 1 43.0 Weakly correlated
27 ZNF334 1 99.0 Highly correlated
28 ZNF682 1 28.9 Weakly correlated
29 ZFP37 1 99.0 Highly correlated
30 ZNF707 1 74.0 Weakly correlated
31 ZNF324 1 99.0 Highly correlated
32 ZNF175 1 94.0 Moderately correlated
33 ZNF792 1 94.0 Moderately correlated
34 ZNF75D 1 94.0 Moderately correlated
35 ZNF610 1 28.9 Weakly correlated
36 ZNF585A 1 99.0 Highly correlated
37 ZNF182 1 99.0 Highly correlated
38 ZNF766 1 43.0 Weakly correlated
39 ZNF554 1 99.0 Highly correlated
40 ZNF394 1 99.0 Highly correlated
41 ZKSCAN1 1 160.0 Weakly correlated
42 ZIK1 1 87.0 Moderately correlated
43 ZFP69 1 99.0 Highly correlated
44 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF680 28.9 Weakly correlated
2 ZNF793 99.0 Highly correlated