ZRdb KZFP & Repeats
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LTR_MER4A1

  • Name
    MER4A1
  • Repbase
    MER4A1
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000795
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgaaaggaaaataaatcttggggccccaaaatcactaagctaaagggaaaagtcaagctgggaactgcttagggcaaacctgcctcccattctattcaaagtcacccctctgctcactgagataaatgcatatctgattgcctcctttggagaggctaatcagaaactcaaaagaatgcaaccatttgtctctcacctacctgtgacctggaagccccctccccgcttcgagtcntcccgcctttgcttcgagttgtcccgcctttccggaccgaaccaatgtncatcttacatatgttgattgatgtctcatgtctccctaaaatgtataaaaccaagctgtgccccgaccaccttgggcacatgtcgtcaggacctcctgaggctgtgtcacgggcgcgcgtcctcaaccttggcaaaataaactttctaaattaactgagacctgtctcagattttcggggttcaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 85 6.4 Weakly correlated
2 ZNF766 41 43.0 Weakly correlated
3 ZNF382 23 99.0 Weakly correlated
4 ZNF440 23 28.9 Weakly correlated
5 ZNF506 19 28.9 Weakly correlated
6 ZNF394 16 99.0 Weakly correlated
7 ZNF589 16 28.9 Weakly correlated
8 ZNF175 13 94.0 Weakly correlated
9 ZNF263 12 180.0 Weakly correlated
10 ZKSCAN8 12 160.0 Weakly correlated
11 ZNF317 11 99.0 Weakly correlated
12 ZNF534 11 19.6 Weakly correlated
13 ZNF18 11 160.0 Weakly correlated
14 ZNF197 11 99.0 Weakly correlated
15 ZNF486 10 8.6 Weakly correlated
16 ZNF2 9 99.0 Weakly correlated
17 ZNF680 9 28.9 Weakly correlated
18 ZNF705B 8 28.9 Weakly correlated
19 ZIM3 8 87.0 Weakly correlated
20 ZFP37 8 99.0 Weakly correlated
21 ZNF610 7 28.9 Weakly correlated
22 ZFP57 7 87.0 Weakly correlated
23 ZFP69B 7 99.0 Weakly correlated
24 ZNF251 7 94.0 Weakly correlated
25 ZNF705D 6 28.9 Weakly correlated
26 ZNF468 6 28.9 Weakly correlated
27 ZNF274 5 99.0 Weakly correlated
28 ZNF723 5 15.2 Weakly correlated
29 ZNF257 5 0.0 Weakly correlated
30 ZNF101 5 43.0 Weakly correlated
31 ZNF679 5 28.9 Weakly correlated
32 ZKSCAN1 4 160.0 Weakly correlated
33 ZNF248 4 99.0 Weakly correlated
34 ZNF324 4 99.0 Weakly correlated
35 ZNF793 3 99.0 Weakly correlated
36 ZNF707 3 74.0 Highly correlated
37 ZNF28 3 28.9 Weakly correlated
38 ZNF528 3 43.0 Weakly correlated
39 ZNF597 3 94.0 Weakly correlated
40 ZNF735 3 28.9 Weakly correlated
41 ZNF43 3 43.0 Weakly correlated
42 ZNF320 2 28.9 Weakly correlated
43 ZNF169 2 94.0 Weakly correlated
44 ZNF792 2 94.0 Weakly correlated
45 ZNF141 2 43.0 Weakly correlated
46 ZNF682 2 28.9 Weakly correlated
47 ZNF140 2 99.0 Weakly correlated
48 ZNF554 2 99.0 Weakly correlated
49 ZNF558 2 99.0 Weakly correlated
50 ZNF584 2 99.0 Weakly correlated
51 ZNF585B 2 99.0 Weakly correlated
52 ZNF136 2 74.0 Highly correlated
53 ZNF92 1 28.9 Weakly correlated
54 ZNF700 1 28.9 Weakly correlated
55 ZNF701 1 28.9 Weakly correlated
56 ZNF730 1 19.6 Weakly correlated
57 ZNF75D 1 94.0 Weakly correlated
58 ZNF789 1 99.0 Weakly correlated
59 ZNF799 1 43.0 Weakly correlated
60 ZNF84 1 99.0 Weakly correlated
61 ZNF850 1 28.9 Weakly correlated
62 ZNF878 1 43.0 Weakly correlated
63 ZNF8 1 99.0 Weakly correlated
64 ZNF44 1 43.0 Weakly correlated
65 ZNF282 1 319.0 Weakly correlated
66 ZNF26 1 99.0 Weakly correlated
67 ZNF33A 1 99.0 Weakly correlated
68 ZNF250 1 99.0 Weakly correlated
69 ZNF417 1 28.9 Weakly correlated
70 ZNF41 1 99.0 Weakly correlated
71 ZNF429 1 28.9 Weakly correlated
72 ZNF441 1 43.0 Weakly correlated
73 ZNF445 1 99.0 Weakly correlated
74 ZNF695 1 28.9 Weakly correlated
75 ZNF480 1 43.0 Weakly correlated
76 ZNF485 1 94.0 Weakly correlated
77 ZNF160 1 74.0 Highly correlated
78 ZNF547 1 74.0 Highly correlated
79 ZNF557 1 15.2 Weakly correlated
80 ZNF133 1 99.0 Weakly correlated
81 ZNF641 1 99.0 Weakly correlated
82 ZNF671 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 59 6.4 Weakly correlated
2 ZNF440 21 28.9 Weakly correlated
3 ZNF506 15 28.9 Weakly correlated
4 ZNF468 6 28.9 Weakly correlated
5 ZNF263 6 180.0 Weakly correlated
6 ZNF589 5 28.9 Weakly correlated
7 ZIM3 5 87.0 Weakly correlated
8 ZNF197 5 99.0 Weakly correlated
9 ZNF18 4 160.0 Weakly correlated
10 ZNF723 4 15.2 Weakly correlated
11 ZNF248 3 99.0 Weakly correlated
12 ZNF175 3 94.0 Weakly correlated
13 ZNF534 3 19.6 Weakly correlated
14 ZNF584 2 99.0 Weakly correlated
15 ZNF695 1 28.9 Weakly correlated
16 ZNF528 1 43.0 Weakly correlated
17 ZNF485 1 94.0 Weakly correlated
18 ZNF75D 1 94.0 Weakly correlated
19 ZNF486 1 8.6 Weakly correlated
20 ZNF429 1 28.9 Weakly correlated
21 ZNF28 1 28.9 Weakly correlated
22 ZNF766 1 43.0 Weakly correlated
23 ZNF735 1 28.9 Weakly correlated
24 ZNF317 1 99.0 Weakly correlated
25 ZNF101 1 43.0 Weakly correlated
26 ZNF789 1 99.0 Weakly correlated
27 ZNF480 1 43.0 Weakly correlated
28 ZNF141 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF440 28.9 Weakly correlated
2 ZNF468 28.9 Weakly correlated