ZRdb KZFP & Repeats
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LTR_MER4A

  • Name
    MER4A
  • Repbase
    MER4A
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000892
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgaaaggaaaataaatctcgggaccccaaaatcactaagccaagggaaaagtcaagctgggaactgcgtcaggcaaacctgcctcccattttattcctaaataagatagctacaaagataaaaaagctacatacctccctcacaatttgcccacaaggaaattccttgtgggcctcaagatctttaccctaaaacagttctgttgaatttcaccctggcaatgtaaattgatagcttatcttcacaggtacagaactcaaagtcatccctctgctcacctgagacaaatgcatatctgattgcttcctctgccctattgtttatgtaaaaatgcagattcactgagccagactaaattgtgtattcagtgaaaggctgatcaaagactcaaaagaatgcaaccntttgtctcttatctacctatgacctggaagcccccgcttcgagttgtcccgcctttccggaccgaaccaatgtacatcttacacatattgattgatgtctcatgtctccctaaaatgtataaaagcaagctgtaccccgaccaccttgggcacatgtcgtcaggacctcctgaggctgtgtcacgggcgcgtccttaaccttggcaaaataaactttctaaattgattgagacctgtctcagatattttgggttcaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 111 6.4 Weakly correlated
2 ZNF680 52 28.9 Weakly correlated
3 ZNF382 35 99.0 Weakly correlated
4 ZNF766 26 43.0 Weakly correlated
5 ZNF394 22 99.0 Weakly correlated
6 ZNF101 13 43.0 Weakly correlated
7 ZNF175 12 94.0 Weakly correlated
8 ZNF263 12 180.0 Weakly correlated
9 ZFP37 11 99.0 Weakly correlated
10 ZNF679 10 28.9 Weakly correlated
11 ZNF2 10 99.0 Weakly correlated
12 ZNF878 10 43.0 Weakly correlated
13 ZNF197 10 99.0 Weakly correlated
14 ZNF589 9 28.9 Weakly correlated
15 ZNF701 8 28.9 Weakly correlated
16 ZNF705B 8 28.9 Weakly correlated
17 ZNF584 7 99.0 Weakly correlated
18 ZFP69B 6 99.0 Weakly correlated
19 ZNF610 5 28.9 Weakly correlated
20 ZNF793 5 99.0 Weakly correlated
21 ZNF558 5 99.0 Weakly correlated
22 ZKSCAN8 5 160.0 Weakly correlated
23 ZNF324 5 99.0 Weakly correlated
24 ZNF705D 5 28.9 Weakly correlated
25 ZNF133 4 99.0 Weakly correlated
26 ZNF18 4 160.0 Weakly correlated
27 ZIM3 4 87.0 Weakly correlated
28 ZNF140 3 99.0 Weakly correlated
29 ZNF585B 3 99.0 Weakly correlated
30 ZNF441 3 43.0 Weakly correlated
31 ZNF792 3 94.0 Weakly correlated
32 ZNF486 3 8.6 Weakly correlated
33 ZNF528 3 43.0 Weakly correlated
34 ZNF707 2 74.0 Highly correlated
35 ZNF641 2 99.0 Weakly correlated
36 ZNF75A 2 94.0 Weakly correlated
37 ZKSCAN1 2 160.0 Weakly correlated
38 ZNF425 2 94.0 Weakly correlated
39 ZNF823 2 43.0 Weakly correlated
40 ZNF317 2 99.0 Weakly correlated
41 ZNF182 2 99.0 Weakly correlated
42 ZNF264 2 99.0 Weakly correlated
43 ZNF257 2 0.0 Weakly correlated
44 ZNF251 2 94.0 Weakly correlated
45 ZNF684 1 99.0 Weakly correlated
46 ZNF92 1 28.9 Weakly correlated
47 ZNF777 1 319.0 Weakly correlated
48 ZNF700 1 28.9 Weakly correlated
49 ZNF723 1 15.2 Weakly correlated
50 ZNF850 1 28.9 Weakly correlated
51 ZNF8 1 99.0 Weakly correlated
52 ZNF506 1 28.9 Weakly correlated
53 ZNF136 1 74.0 Highly correlated
54 ZNF224 1 69.0 Moderately correlated
55 ZNF26 1 99.0 Weakly correlated
56 ZNF274 1 99.0 Weakly correlated
57 ZNF354C 1 99.0 Weakly correlated
58 ZNF436 1 180.0 Weakly correlated
59 ZNF468 1 28.9 Weakly correlated
60 ZNF485 1 94.0 Weakly correlated
61 ZNF675 1 8.6 Weakly correlated
62 ZNF519 1 19.6 Weakly correlated
63 ZNF534 1 19.6 Weakly correlated
64 ZNF547 1 74.0 Highly correlated
65 ZNF585A 1 99.0 Weakly correlated
66 ZNF586 1 43.0 Weakly correlated
67 ZNF605 1 99.0 Weakly correlated
68 ZNF658 1 99.0 Weakly correlated
69 ZNF671 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 95 6.4 Weakly correlated
2 ZNF101 6 43.0 Weakly correlated
3 ZNF263 5 180.0 Weakly correlated
4 ZNF133 4 99.0 Weakly correlated
5 ZNF701 4 28.9 Weakly correlated
6 ZNF140 3 99.0 Weakly correlated
7 ZNF766 3 43.0 Weakly correlated
8 ZNF394 3 99.0 Weakly correlated
9 ZNF197 3 99.0 Weakly correlated
10 ZNF793 2 99.0 Weakly correlated
11 ZNF679 2 28.9 Weakly correlated
12 ZNF584 2 99.0 Weakly correlated
13 ZNF175 1 94.0 Weakly correlated
14 ZNF257 1 0.0 Weakly correlated
15 ZNF705B 1 28.9 Weakly correlated
16 ZNF792 1 94.0 Weakly correlated
17 ZNF589 1 28.9 Weakly correlated
18 ZNF506 1 28.9 Weakly correlated
19 ZNF723 1 15.2 Weakly correlated
20 ZNF264 1 99.0 Weakly correlated
21 ZNF675 1 8.6 Weakly correlated
22 ZNF2 1 99.0 Weakly correlated
23 ZNF468 1 28.9 Weakly correlated
24 ZNF519 1 19.6 Weakly correlated
25 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF479 6.4 Weakly correlated