ZRdb KZFP & Repeats
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LTR_MER49

  • Name
    MER49
  • Repbase
    MER49
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000794
Description :

LTR associated with MER4-int. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaaactaaaaataaaatcctaagccccccaccgactgaacggaccccctcttggccaaggggaccccagagaaaccttaaaaactgagttcccggccatgacgggacgggaggtcagacacgcctcgttataccccctcccttttgcggtttagacacaacaactgaccagcattaatgttaaaatagagatcataagactgacagaacggactctttgtggcaataagataccaaattataaacaggacctaaggccatgccaggcaagggttaagtcacgcacccctacacttaaagaataaactatgttctaactgccacaaggtttttctttttctctagcagctaaacaagcactggcctcgagataagcaatattaaaacaattgcagctcatccaccgccagacgctgactaactgaccccctgttccaccagccataactacagctttgattggacaagagactgatttcagtaactttctcctgataagagaccaccgaccatggactggttctggccggtttacagaggctgcgcacttgngtgccttcgtgtcctgaaaagaccttttgacgtatagggcctaattgtaatacatttaaatgttaagtctccaccccaaagtgaacatgggtcgtatgtnacatgcatgtttgttcaatacgcatgcgtcaggaccaccttcatgaatattcatagctcctcctgtaacctgttgaatatgtatgtttagccaacccgttcagcataaagctcctgccccaacccctcctccttcgaagtgcctgtctctggtcttngccggaggctacgcttcccagcctgcgggatggccaccttgcaggctgtaaccctttataagaaataaagtctcctttccaaatttatagatcttgtgatttttnagttaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 93 43.0 Highly correlated
2 ZNF382 76 99.0 Weakly correlated
3 ZNF418 53 43.0 Highly correlated
4 ZNF589 44 28.9 Moderately correlated
5 ZNF175 36 94.0 Weakly correlated
6 ZNF197 35 99.0 Weakly correlated
7 ZKSCAN8 29 160.0 Weakly correlated
8 ZKSCAN1 28 160.0 Weakly correlated
9 ZNF584 28 99.0 Weakly correlated
10 ZNF394 22 99.0 Weakly correlated
11 ZNF701 14 28.9 Moderately correlated
12 ZNF558 13 99.0 Weakly correlated
13 ZFP37 13 99.0 Weakly correlated
14 ZNF263 11 180.0 Weakly correlated
15 ZFP57 11 87.0 Weakly correlated
16 ZNF101 10 43.0 Highly correlated
17 ZNF679 10 28.9 Moderately correlated
18 ZNF2 10 99.0 Weakly correlated
19 ZNF320 9 28.9 Moderately correlated
20 ZNF680 9 28.9 Moderately correlated
21 ZNF18 9 160.0 Weakly correlated
22 ZFP69B 9 99.0 Weakly correlated
23 ZNF705B 8 28.9 Moderately correlated
24 ZNF705D 7 28.9 Moderately correlated
25 ZNF723 7 15.2 Weakly correlated
26 ZNF479 7 6.4 Weakly correlated
27 ZNF554 6 99.0 Weakly correlated
28 ZIM3 6 87.0 Weakly correlated
29 ZNF324 6 99.0 Weakly correlated
30 ZNF610 5 28.9 Moderately correlated
31 ZNF534 5 19.6 Weakly correlated
32 ZNF317 5 99.0 Weakly correlated
33 ZNF251 5 94.0 Weakly correlated
34 ZNF793 5 99.0 Weakly correlated
35 ZNF257 4 0.0 Weakly correlated
36 ZNF792 4 94.0 Weakly correlated
37 ZNF563 4 28.9 Moderately correlated
38 ZNF695 3 28.9 Moderately correlated
39 ZNF284 3 43.0 Highly correlated
40 ZNF274 3 99.0 Weakly correlated
41 ZNF264 3 99.0 Weakly correlated
42 ZNF597 3 94.0 Weakly correlated
43 ZNF75D 2 94.0 Weakly correlated
44 ZNF878 2 43.0 Highly correlated
45 ZFP28 2 99.0 Weakly correlated
46 ZNF549 2 87.0 Weakly correlated
47 ZNF92 2 28.9 Moderately correlated
48 ZNF519 2 19.6 Weakly correlated
49 ZNF273 2 28.9 Moderately correlated
50 ZNF140 2 99.0 Weakly correlated
51 ZNF441 2 43.0 Highly correlated
52 ZNF468 2 28.9 Moderately correlated
53 ZNF485 2 94.0 Weakly correlated
54 ZNF528 2 43.0 Highly correlated
55 ZNF10 1 99.0 Weakly correlated
56 ZNF91 1 6.0 Weakly correlated
57 ZNF81 1 99.0 Weakly correlated
58 ZNF133 1 99.0 Weakly correlated
59 ZNF780A 1 43.0 Highly correlated
60 ZNF160 1 74.0 Weakly correlated
61 ZNF17 1 69.0 Weakly correlated
62 ZNF75A 1 94.0 Weakly correlated
63 ZNF182 1 99.0 Weakly correlated
64 ZNF716 1 19.6 Weakly correlated
65 ZNF202 1 160.0 Weakly correlated
66 ZKSCAN5 1 160.0 Weakly correlated
67 ZNF248 1 99.0 Weakly correlated
68 ZNF28 1 28.9 Moderately correlated
69 ZNF334 1 99.0 Weakly correlated
70 ZNF337 1 43.0 Highly correlated
71 ZNF671 1 94.0 Weakly correlated
72 ZNF641 1 99.0 Weakly correlated
73 ZNF350 1 99.0 Weakly correlated
74 ZNF430 1 19.6 Weakly correlated
75 ZNF436 1 180.0 Weakly correlated
76 ZNF585B 1 99.0 Weakly correlated
77 ZNF440 1 28.9 Moderately correlated
78 ZNF552 1 28.9 Moderately correlated
79 ZNF486 1 8.6 Weakly correlated
80 ZNF543 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF418 29 43.0 Highly correlated
2 ZNF766 18 43.0 Highly correlated
3 ZNF197 16 99.0 Weakly correlated
4 ZNF589 16 28.9 Moderately correlated
5 ZNF584 14 99.0 Weakly correlated
6 ZNF175 12 94.0 Weakly correlated
7 ZNF382 8 99.0 Weakly correlated
8 ZFP57 5 87.0 Weakly correlated
9 ZNF701 4 28.9 Moderately correlated
10 ZIM3 4 87.0 Weakly correlated
11 ZNF723 4 15.2 Weakly correlated
12 ZNF679 3 28.9 Moderately correlated
13 ZNF793 3 99.0 Weakly correlated
14 ZNF317 2 99.0 Weakly correlated
15 ZNF468 2 28.9 Moderately correlated
16 ZNF394 2 99.0 Weakly correlated
17 ZNF695 2 28.9 Moderately correlated
18 ZNF534 2 19.6 Weakly correlated
19 ZNF320 2 28.9 Moderately correlated
20 ZNF558 2 99.0 Weakly correlated
21 ZNF264 1 99.0 Weakly correlated
22 ZFP37 1 99.0 Weakly correlated
23 ZNF274 1 99.0 Weakly correlated
24 ZNF563 1 28.9 Moderately correlated
25 ZNF549 1 87.0 Weakly correlated
26 ZNF792 1 94.0 Weakly correlated
27 ZNF780A 1 43.0 Highly correlated
28 ZNF75D 1 94.0 Weakly correlated
29 ZNF554 1 99.0 Weakly correlated
30 ZNF263 1 180.0 Weakly correlated
31 ZNF251 1 94.0 Weakly correlated
32 ZNF248 1 99.0 Weakly correlated
33 ZKSCAN5 1 160.0 Weakly correlated
34 ZNF479 1 6.4 Weakly correlated
35 ZKSCAN1 1 160.0 Weakly correlated
36 ZNF440 1 28.9 Moderately correlated
37 ZNF140 1 99.0 Weakly correlated
38 ZNF257 1 0.0 Weakly correlated
39 ZNF18 1 160.0 Weakly correlated
40 ZNF2 1 99.0 Weakly correlated
41 ZNF680 1 28.9 Moderately correlated
42 ZNF101 1 43.0 Highly correlated
43 ZNF610 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF418 43.0 Highly correlated