ZRdb KZFP & Repeats
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LTR_MER48

  • Name
    MER48
  • Repbase
    MER48
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000793
Description :

Initially reported in the opposite orientation. Note that MER standsfor MEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaagattctccccggggcctgaaagcttaaggggatgaataactcctcccttctcaggcccagtcccaaggcgcaaggccacttgcgccagcagcgtgcgtcagcaagatagcagaagcaggaagagagccggccggaagacacctaccctggccggaagacacgtacccctgaagatcgagaaagaggccgtccgggtacnacgtagcagttacgtcagactgggacacttcctgtttacaggagactataaaacccctgccccgtcctcacttggggctgacgccattttaggcctcagcccgcctgcacccaggcgctcattaaaacagcgtgttgctccacaccgcctcgtgttgtctgttggcgcgctctcggggttcgaaccgatacaagaaccttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF175 60 94.0 Weakly correlated
2 ZNF589 58 28.9 Highly correlated
3 ZNF766 58 43.0 Weakly correlated
4 ZKSCAN8 33 160.0 Weakly correlated
5 ZNF584 30 99.0 Weakly correlated
6 ZNF197 24 99.0 Weakly correlated
7 ZNF18 13 160.0 Weakly correlated
8 ZKSCAN1 12 160.0 Weakly correlated
9 ZNF793 9 99.0 Weakly correlated
10 ZNF317 4 99.0 Weakly correlated
11 ZNF534 4 19.6 Moderately correlated
12 ZNF735 3 28.9 Highly correlated
13 ZFP57 3 87.0 Weakly correlated
14 ZNF705D 2 28.9 Highly correlated
15 ZNF705B 2 28.9 Highly correlated
16 ZNF679 2 28.9 Highly correlated
17 ZNF251 2 94.0 Weakly correlated
18 ZFP37 2 99.0 Weakly correlated
19 ZNF585B 2 99.0 Weakly correlated
20 ZNF93 1 8.6 Weakly correlated
21 ZNF723 1 15.2 Moderately correlated
22 ZNF680 1 28.9 Highly correlated
23 ZNF597 1 94.0 Weakly correlated
24 ZNF490 1 43.0 Weakly correlated
25 ZNF486 1 8.6 Weakly correlated
26 ZNF485 1 94.0 Weakly correlated
27 ZNF441 1 43.0 Weakly correlated
28 ZNF417 1 28.9 Highly correlated
29 ZNF382 1 99.0 Weakly correlated
30 ZNF324 1 99.0 Weakly correlated
31 ZNF263 1 180.0 Weakly correlated
32 ZNF182 1 99.0 Weakly correlated
33 ZNF140 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZKSCAN8 14 160.0 Weakly correlated
2 ZNF793 5 99.0 Weakly correlated
3 ZNF735 3 28.9 Highly correlated
4 ZNF534 3 19.6 Moderately correlated
5 ZNF584 1 99.0 Weakly correlated
6 ZNF417 1 28.9 Highly correlated
7 ZNF175 1 94.0 Weakly correlated
8 ZNF197 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats