ZRdb KZFP & Repeats
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LTR_MER41G

  • Name
    MER41G
  • Repbase
    MER41G
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000764
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagataggaatagcactgggtggtcgcaggaggatggaaaaacccaaacaacagctaaaacaagaactaggcaaagaaaccacaggataacagaaaacccaaaataagggagagaaaacggccaaaaccccggtcagggtgacatgtccatgactcttccgggcaaacccaaataagggagaaagggggcggtaaccggggggggggtccctgaaatcccctccttttccagaatacctaatgattattccaccccctaattaaagaaacacccataaaataggaatgctgggtggtcacaggagaagcgggaaaatatcaagcagcaatttcacatagcagcaagaaaggagctgttaaaattagctacaaggacaaggacgagcctgggctgataagaccctaacaaacaggatgggggctaagctggctgaaaccggctgggtccaacatggcgctggatttgacccatgccctaccccagacctaattatacgctcattaccatactaaatcacacacccaccagcgccatgacagatccgagcatgcccatatttagtataaaaatgggtggcaccccaattctaagaaatccccncctttttcctagaanacctnatgattattccaccccctaattagaagagcccataaaattagaaacccaaactccgttgtgcgcgactcgctctcncgagcacgcccgcacttctctcttaagtgtgtactttcgctttgcaataaaagcttcttgcctttcgcttcattctgactcgtccctgaattctttctcgcgacggtgtcaagaacctggacaccggctggggctggggctngggtctcaccggcatccggagaccctcctgagccctccggcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 29 87.0 Weakly correlated
2 ZNF382 15 99.0 Weakly correlated
3 ZNF766 14 43.0 Weakly correlated
4 ZNF589 13 28.9 Weakly correlated
5 ZNF175 11 94.0 Weakly correlated
6 ZNF394 11 99.0 Weakly correlated
7 ZNF584 8 99.0 Weakly correlated
8 ZNF197 7 99.0 Weakly correlated
9 ZFP37 7 99.0 Weakly correlated
10 ZNF2 7 99.0 Weakly correlated
11 ZKSCAN8 6 160.0 Weakly correlated
12 ZFP69B 6 99.0 Weakly correlated
13 ZNF18 5 160.0 Weakly correlated
14 ZNF317 4 99.0 Weakly correlated
15 ZNF610 4 28.9 Weakly correlated
16 ZNF263 3 180.0 Weakly correlated
17 ZNF324 3 99.0 Weakly correlated
18 ZNF534 3 19.6 Weakly correlated
19 ZNF597 3 94.0 Weakly correlated
20 ZNF257 2 0.0 Weakly correlated
21 ZNF792 2 94.0 Weakly correlated
22 ZNF189 2 99.0 Weakly correlated
23 ZNF682 2 28.9 Weakly correlated
24 ZNF554 2 99.0 Weakly correlated
25 ZNF101 2 43.0 Weakly correlated
26 RBAK 1 99.0 Weakly correlated
27 ZNF707 1 74.0 Highly correlated
28 ZNF679 1 28.9 Weakly correlated
29 ZNF641 1 99.0 Weakly correlated
30 ZNF823 1 43.0 Weakly correlated
31 ZNF845 1 28.9 Weakly correlated
32 ZNF585B 1 99.0 Weakly correlated
33 ZNF558 1 99.0 Weakly correlated
34 ZNF549 1 87.0 Weakly correlated
35 ZNF506 1 28.9 Weakly correlated
36 ZNF485 1 94.0 Weakly correlated
37 ZNF471 1 94.0 Weakly correlated
38 ZNF418 1 43.0 Weakly correlated
39 ZNF28 1 28.9 Weakly correlated
40 ZNF202 1 160.0 Weakly correlated
41 ZNF140 1 99.0 Weakly correlated
42 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 19 87.0 Weakly correlated
2 ZNF534 3 19.6 Weakly correlated
3 ZFP37 2 99.0 Weakly correlated
4 ZFP69B 2 99.0 Weakly correlated
5 ZNF766 2 43.0 Weakly correlated
6 ZNF101 1 43.0 Weakly correlated
7 ZNF140 1 99.0 Weakly correlated
8 ZNF324 1 99.0 Weakly correlated
9 ZNF485 1 94.0 Weakly correlated
10 ZNF597 1 94.0 Weakly correlated
11 ZNF197 1 99.0 Weakly correlated
12 ZNF610 1 28.9 Weakly correlated
13 ZNF28 1 28.9 Weakly correlated
14 ZNF506 1 28.9 Weakly correlated
15 ZNF554 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats