ZRdb KZFP & Repeats
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LTR_MER41E

  • Name
    MER41E
  • Repbase
    MER41E
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000763
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagacaggaataatacagggtggtcgcaggagaatagaaaattccaggcagcagtttcacatgactagcaaaaggaaactgttgaaatagctgcagaagctaggggctgataagaccctgaaaaaccagggtgtgggccaagctggctaagaccgactggacccaacatggcgctggatttgacctaggtttcacctaggacctcattatacgctcattaacatactaaatcacacacccaccagcgccatgacagttccgggaacacccatatttggtgtaaaaatgggtggcaccacagttccgagaaatctccacctttttccaggaatcttcatgaatattccaccccttggttaaagaaacccataaaggtagaagccccaaaccccnttgngcgcgactcctctcttgagtacgcccgcactcccctttcttgagtgtgtacttttcgctttgcaataaatctccgtactttcactattttctgactcgtccttgaattccttctcgcgacggtgtcaagagcctggacaccggctggggtcgaggtcccaccggcgtttggggacctcccccagcccaccggtatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 75 43.0 Weakly correlated
2 ZNF589 55 28.9 Weakly correlated
3 ZNF175 45 94.0 Weakly correlated
4 ZNF584 33 99.0 Weakly correlated
5 ZNF197 32 99.0 Weakly correlated
6 ZKSCAN8 29 160.0 Weakly correlated
7 ZKSCAN1 19 160.0 Weakly correlated
8 ZNF382 15 99.0 Weakly correlated
9 ZNF597 6 94.0 Weakly correlated
10 ZIM3 6 87.0 Weakly correlated
11 ZNF486 6 8.6 Weakly correlated
12 ZNF682 5 28.9 Weakly correlated
13 ZNF263 4 180.0 Weakly correlated
14 ZNF429 4 28.9 Weakly correlated
15 ZNF679 3 28.9 Weakly correlated
16 ZNF394 3 99.0 Weakly correlated
17 ZNF354A 2 99.0 Weakly correlated
18 ZFP37 2 99.0 Weakly correlated
19 ZNF680 2 28.9 Weakly correlated
20 ZNF274 2 99.0 Weakly correlated
21 ZNF534 2 19.6 Weakly correlated
22 ZNF324 2 99.0 Weakly correlated
23 ZNF2 2 99.0 Weakly correlated
24 ZNF701 2 28.9 Weakly correlated
25 ZNF793 2 99.0 Weakly correlated
26 ZNF92 2 28.9 Weakly correlated
27 ZNF695 1 28.9 Weakly correlated
28 ZNF436 1 180.0 Weakly correlated
29 ZNF707 1 74.0 Highly correlated
30 ZNF723 1 15.2 Weakly correlated
31 ZNF735 1 28.9 Weakly correlated
32 ZNF786 1 99.0 Weakly correlated
33 ZNF808 1 19.6 Weakly correlated
34 ZNF880 1 28.9 Weakly correlated
35 ZNF585A 1 99.0 Weakly correlated
36 ZNF558 1 99.0 Weakly correlated
37 ZNF528 1 43.0 Weakly correlated
38 ZNF519 1 19.6 Weakly correlated
39 ZNF485 1 94.0 Weakly correlated
40 ZNF320 1 28.9 Weakly correlated
41 ZNF273 1 28.9 Weakly correlated
42 ZNF257 1 0.0 Weakly correlated
43 ZNF251 1 94.0 Weakly correlated
44 ZNF18 1 160.0 Weakly correlated
45 ZNF189 1 99.0 Weakly correlated
46 ZNF182 1 99.0 Weakly correlated
47 ZNF141 1 43.0 Weakly correlated
48 ZNF12 1 99.0 Weakly correlated
49 ZNF101 1 43.0 Weakly correlated
50 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 17 43.0 Weakly correlated
2 ZNF175 13 94.0 Weakly correlated
3 ZNF589 13 28.9 Weakly correlated
4 ZNF197 9 99.0 Weakly correlated
5 ZNF584 8 99.0 Weakly correlated
6 ZNF597 5 94.0 Weakly correlated
7 ZNF429 3 28.9 Weakly correlated
8 ZIM3 3 87.0 Weakly correlated
9 ZNF382 2 99.0 Weakly correlated
10 ZNF735 1 28.9 Weakly correlated
11 ZNF534 1 19.6 Weakly correlated
12 ZNF723 1 15.2 Weakly correlated
13 ZNF793 1 99.0 Weakly correlated
14 ZNF485 1 94.0 Weakly correlated
15 ZNF354A 1 99.0 Weakly correlated
16 ZNF585A 1 99.0 Weakly correlated
17 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF584 99.0 Weakly correlated
4 ZNF589 28.9 Weakly correlated