ZRdb KZFP & Repeats
...

LTR_MER41D

  • Name
    MER41D
  • Repbase
    MER41D
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000781
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttagggaagcaggagcctaggagagccagagtgacaccattttaaaatcaactccatcttaaaactagcaaggcacattccttgccagtcacgacccatggtcntaagatgtttacagctgaggaagcagcttaangatgcctgcaaggacanactcctacaacaacagaaagtccagatgtcccaatacccataacaatatatgctttcaagataattatagttatgctttgatgtacttacgcactaaaatgtcaaggatagttttctttaaatcaacagaataataaattttgtcatgctgtcagcccacccgcacgtaggcacagcttagcttagtctttacatagacaagacccctatataagaaaaacttaaaacaaagacggtgcgttcctccncttgctttctgaggacgccctactctgtaacggagtagctttcaataaactntctcttctcactgcactctgcgactcgccttgaattccttcctgcgcgagatccaagaaccctctcttggggtctggatcgagacccctttttccggcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 29 99.0 Weakly correlated
2 ZNF766 27 43.0 Weakly correlated
3 ZNF175 21 94.0 Weakly correlated
4 ZNF394 16 99.0 Weakly correlated
5 ZNF589 16 28.9 Weakly correlated
6 ZNF584 14 99.0 Weakly correlated
7 ZNF197 13 99.0 Weakly correlated
8 ZKSCAN8 11 160.0 Weakly correlated
9 ZNF680 9 28.9 Weakly correlated
10 ZNF324 5 99.0 Weakly correlated
11 ZNF2 5 99.0 Weakly correlated
12 ZNF101 5 43.0 Weakly correlated
13 ZNF263 5 180.0 Weakly correlated
14 ZFP57 4 87.0 Weakly correlated
15 ZNF558 4 99.0 Weakly correlated
16 ZNF610 4 28.9 Weakly correlated
17 ZNF793 4 99.0 Weakly correlated
18 ZFP37 4 99.0 Weakly correlated
19 ZIM3 4 87.0 Weakly correlated
20 ZNF669 3 43.0 Weakly correlated
21 ZNF679 3 28.9 Weakly correlated
22 ZNF75D 3 94.0 Weakly correlated
23 ZFP69B 3 99.0 Weakly correlated
24 ZNF701 2 28.9 Weakly correlated
25 ZNF585B 2 99.0 Weakly correlated
26 ZNF792 2 94.0 Weakly correlated
27 ZNF486 2 8.6 Weakly correlated
28 ZNF92 2 28.9 Weakly correlated
29 ZNF479 2 6.4 Weakly correlated
30 ZNF257 2 0.0 Weakly correlated
31 ZNF264 2 99.0 Weakly correlated
32 ZNF224 2 69.0 Moderately correlated
33 ZNF202 2 160.0 Weakly correlated
34 ZNF140 2 99.0 Weakly correlated
35 ZNF28 2 28.9 Weakly correlated
36 ZNF18 2 160.0 Weakly correlated
37 ZNF723 1 15.2 Weakly correlated
38 ZNF251 1 94.0 Weakly correlated
39 ZNF695 1 28.9 Weakly correlated
40 ZKSCAN1 1 160.0 Weakly correlated
41 ZNF75A 1 94.0 Weakly correlated
42 ZNF184 1 99.0 Weakly correlated
43 ZNF133 1 99.0 Weakly correlated
44 ZKSCAN5 1 160.0 Weakly correlated
45 ZNF816 1 28.9 Weakly correlated
46 ZNF8 1 99.0 Weakly correlated
47 ZNF429 1 28.9 Weakly correlated
48 ZNF267 1 43.0 Weakly correlated
49 ZNF585A 1 99.0 Weakly correlated
50 ZNF273 1 28.9 Weakly correlated
51 ZNF566 1 99.0 Weakly correlated
52 ZNF554 1 99.0 Weakly correlated
53 ZNF547 1 74.0 Highly correlated
54 ZNF534 1 19.6 Weakly correlated
55 ZNF528 1 43.0 Weakly correlated
56 ZNF506 1 28.9 Weakly correlated
57 ZNF500 1 160.0 Weakly correlated
58 ZNF343 1 74.0 Highly correlated
59 ZNF485 1 94.0 Weakly correlated
60 ZNF425 1 94.0 Weakly correlated
61 ZNF441 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 3 87.0 Weakly correlated
2 ZNF175 3 94.0 Weakly correlated
3 ZNF680 3 28.9 Weakly correlated
4 ZNF793 3 99.0 Weakly correlated
5 ZNF101 2 43.0 Weakly correlated
6 ZNF589 2 28.9 Weakly correlated
7 ZNF140 1 99.0 Weakly correlated
8 ZNF554 1 99.0 Weakly correlated
9 ZNF723 1 15.2 Weakly correlated
10 ZNF506 1 28.9 Weakly correlated
11 ZNF197 1 99.0 Weakly correlated
12 ZNF584 1 99.0 Weakly correlated
13 ZNF263 1 180.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats