ZRdb KZFP & Repeats
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LTR_MER41C

  • Name
    MER41C
  • Repbase
    MER41C
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000762
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtcagaggcgttcgaaccagagcgactccatcttgagtgagggctaggaaaatgaggctgggacttgctgggctgcattcccagaaagttaggcattcctagcctctagatgtttacggttaagggaacagattgataatgtttactaaacagacccagacttgggagtgtccngatatcccgatatctngagaacaaaggcattcctaattttgctttaaagataataatatcgattcttgcaaaatatagtaattaagaaaattaatcctttatcacaaacccttgtagcagagcacatctcccctatatatacaagcattgtacctagggtggacgcgttcctcctcttactttcgggaacgccctactctgtctatggagtagctgttctttcaccactttactttcttaataaacttgcttttgctttgcactgcggactcgccctgaattctttcttgcgcgagatccaagaaccctctcttggggtctggatcgggacccctttcctgtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 59 43.0 Weakly correlated
2 ZNF175 50 94.0 Weakly correlated
3 ZNF589 45 28.9 Weakly correlated
4 ZNF584 40 99.0 Weakly correlated
5 ZNF197 35 99.0 Weakly correlated
6 ZKSCAN8 26 160.0 Weakly correlated
7 ZNF382 16 99.0 Weakly correlated
8 ZNF394 11 99.0 Weakly correlated
9 ZNF680 10 28.9 Weakly correlated
10 ZNF18 10 160.0 Weakly correlated
11 ZNF317 9 99.0 Weakly correlated
12 ZFP37 9 99.0 Weakly correlated
13 ZNF793 7 99.0 Weakly correlated
14 ZNF597 7 94.0 Weakly correlated
15 ZNF723 7 15.2 Weakly correlated
16 ZNF485 7 94.0 Weakly correlated
17 ZNF701 7 28.9 Weakly correlated
18 ZNF324 6 99.0 Weakly correlated
19 ZNF263 6 180.0 Weakly correlated
20 ZNF2 6 99.0 Weakly correlated
21 ZNF534 4 19.6 Weakly correlated
22 ZNF75D 3 94.0 Weakly correlated
23 ZNF441 3 43.0 Weakly correlated
24 ZNF101 3 43.0 Weakly correlated
25 ZKSCAN1 3 160.0 Weakly correlated
26 ZFP69B 3 99.0 Weakly correlated
27 ZNF679 2 28.9 Weakly correlated
28 ZNF816 2 28.9 Weakly correlated
29 ZFP28 2 99.0 Weakly correlated
30 ZNF486 2 8.6 Weakly correlated
31 ZNF425 2 94.0 Weakly correlated
32 ZNF284 2 43.0 Weakly correlated
33 ZNF257 2 0.0 Weakly correlated
34 ZNF10 1 99.0 Weakly correlated
35 ZNF519 1 19.6 Weakly correlated
36 ZNF141 1 43.0 Weakly correlated
37 ZNF786 1 99.0 Weakly correlated
38 ZNF230 1 28.9 Weakly correlated
39 ZNF251 1 94.0 Weakly correlated
40 ZNF75A 1 94.0 Weakly correlated
41 ZNF705D 1 28.9 Weakly correlated
42 ZNF705B 1 28.9 Weakly correlated
43 ZNF274 1 99.0 Weakly correlated
44 ZNF684 1 99.0 Weakly correlated
45 ZNF28 1 28.9 Weakly correlated
46 ZNF641 1 99.0 Weakly correlated
47 ZNF610 1 28.9 Weakly correlated
48 ZNF468 1 28.9 Weakly correlated
49 ZNF471 1 94.0 Weakly correlated
50 ZNF558 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF485 6 94.0 Weakly correlated
2 ZNF723 5 15.2 Weakly correlated
3 ZNF589 2 28.9 Weakly correlated
4 ZNF701 2 28.9 Weakly correlated
5 ZNF75D 2 94.0 Weakly correlated
6 ZNF793 2 99.0 Weakly correlated
7 ZKSCAN1 1 160.0 Weakly correlated
8 ZNF141 1 43.0 Weakly correlated
9 ZNF394 1 99.0 Weakly correlated
10 ZNF382 1 99.0 Weakly correlated
11 ZNF175 1 94.0 Weakly correlated
12 ZNF684 1 99.0 Weakly correlated
13 ZNF251 1 94.0 Weakly correlated
14 ZNF641 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats