ZRdb KZFP & Repeats
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LTR_MER41B

  • Name
    MER41B
  • Repbase
    MER41B
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000761
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtcagaggcgtttgaaccagagcgactccatcttgaataggggctgggtaaaataaggctgagacctactgggctgcattcccaggaggttaggcattctnagtcacaggatgagataggaggtcggcacaagatacaggtcacaaagaccttgctgataaaacaggntgcggtaaagaagccggccaaaacccaccaaaaccaagatggcgacgaaagtgacctctggtcgtcctcactgctcattatacgctaattataatgcattagcatgctaaaagacactcccaccagcgccatgacagtttacaaatgccatggcaacgtcaggaagttaccctatatggtctaaaaaggggaggaaccctcagttccgggaattgcccacccctttcccggaaaactcatgaataatccaccccttgtttagcatataatcaagaaataaccataagnatagncagccagcagcccacgccgctgctctgcctatggagtagccattcttttattcctttactttcttaataaacttgctttcactttactctatggactcgccccgaattctttcttgcgcgagatccaagaaccctctcttggggtctggatcgggacccctttccggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 884 43.0 Weakly correlated
2 ZNF175 812 94.0 Weakly correlated
3 ZNF589 763 28.9 Weakly correlated
4 ZNF584 594 99.0 Weakly correlated
5 ZNF197 558 99.0 Weakly correlated
6 ZKSCAN8 546 160.0 Weakly correlated
7 ZNF382 84 99.0 Weakly correlated
8 ZKSCAN1 77 160.0 Weakly correlated
9 ZNF793 50 99.0 Weakly correlated
10 ZNF534 35 19.6 Weakly correlated
11 ZNF682 34 28.9 Weakly correlated
12 ZNF394 32 99.0 Weakly correlated
13 ZNF680 30 28.9 Weakly correlated
14 ZNF263 28 180.0 Weakly correlated
15 ZNF18 22 160.0 Weakly correlated
16 ZNF701 22 28.9 Weakly correlated
17 ZFP37 21 99.0 Weakly correlated
18 ZNF2 21 99.0 Weakly correlated
19 ZNF679 18 28.9 Weakly correlated
20 ZNF324 17 99.0 Weakly correlated
21 ZNF75D 17 94.0 Weakly correlated
22 ZNF479 15 6.4 Weakly correlated
23 ZNF684 15 99.0 Weakly correlated
24 ZIM3 15 87.0 Weakly correlated
25 ZNF705B 13 28.9 Weakly correlated
26 ZFP69B 13 99.0 Weakly correlated
27 ZNF317 13 99.0 Weakly correlated
28 ZNF723 12 15.2 Weakly correlated
29 ZNF558 12 99.0 Weakly correlated
30 ZNF597 11 94.0 Weakly correlated
31 ZNF486 11 8.6 Weakly correlated
32 ZFP57 10 87.0 Weakly correlated
33 ZNF554 9 99.0 Weakly correlated
34 ZNF251 8 94.0 Weakly correlated
35 ZNF28 8 28.9 Weakly correlated
36 ZNF705D 8 28.9 Weakly correlated
37 ZNF610 7 28.9 Weakly correlated
38 ZNF101 7 43.0 Weakly correlated
39 ZNF320 6 28.9 Weakly correlated
40 ZNF441 6 43.0 Weakly correlated
41 ZNF92 5 28.9 Weakly correlated
42 ZNF792 5 94.0 Weakly correlated
43 ZNF169 5 94.0 Weakly correlated
44 ZNF274 4 99.0 Weakly correlated
45 ZNF257 4 0.0 Weakly correlated
46 ZNF506 4 28.9 Weakly correlated
47 ZNF578 3 15.2 Weakly correlated
48 ZNF350 3 99.0 Weakly correlated
49 ZNF547 3 74.0 Highly correlated
50 ZNF641 3 99.0 Weakly correlated
51 ZNF528 3 43.0 Weakly correlated
52 ZNF264 3 99.0 Weakly correlated
53 ZNF485 3 94.0 Weakly correlated
54 ZNF182 3 99.0 Weakly correlated
55 ZNF248 2 99.0 Weakly correlated
56 ZNF671 2 94.0 Weakly correlated
57 ZNF224 2 69.0 Moderately correlated
58 ZNF695 2 28.9 Weakly correlated
59 ZNF273 2 28.9 Weakly correlated
60 ZNF202 2 160.0 Weakly correlated
61 ZNF585B 2 99.0 Weakly correlated
62 ZNF334 2 99.0 Weakly correlated
63 ZNF468 2 28.9 Weakly correlated
64 ZNF568 2 99.0 Weakly correlated
65 ZNF445 2 99.0 Weakly correlated
66 ZNF480 2 43.0 Weakly correlated
67 ZNF43 2 43.0 Weakly correlated
68 ZNF141 1 43.0 Weakly correlated
69 ZNF705E 1 0.0 Weakly correlated
70 ZNF730 1 19.6 Weakly correlated
71 ZNF735 1 28.9 Weakly correlated
72 ZNF75A 1 94.0 Weakly correlated
73 ZNF157 1 99.0 Weakly correlated
74 ZNF440 1 28.9 Weakly correlated
75 ZNF786 1 99.0 Weakly correlated
76 ZNF140 1 99.0 Weakly correlated
77 ZNF136 1 74.0 Highly correlated
78 ZNF823 1 43.0 Weakly correlated
79 ZNF84 1 99.0 Weakly correlated
80 ZNF850 1 28.9 Weakly correlated
81 ZNF8 1 99.0 Weakly correlated
82 ZNF91 1 6.0 Weakly correlated
83 ZNF133 1 99.0 Weakly correlated
84 ZNF425 1 94.0 Weakly correlated
85 ZNF567 1 99.0 Weakly correlated
86 ZNF563 1 28.9 Weakly correlated
87 ZNF560 1 43.0 Weakly correlated
88 ZNF284 1 43.0 Weakly correlated
89 ZNF337 1 43.0 Weakly correlated
90 ZNF605 1 99.0 Weakly correlated
91 ZNF607 1 43.0 Weakly correlated
92 ZNF549 1 87.0 Weakly correlated
93 ZNF180 1 99.0 Weakly correlated
94 ZNF530 1 28.9 Weakly correlated
95 ZNF519 1 19.6 Weakly correlated
96 ZNF490 1 43.0 Weakly correlated
97 ZNF681 1 28.9 Weakly correlated
98 ZNF484 1 99.0 Weakly correlated
99 ZNF700 1 28.9 Weakly correlated
100 ZNF471 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF589 37 28.9 Weakly correlated
2 ZNF584 29 99.0 Weakly correlated
3 ZNF175 29 94.0 Weakly correlated
4 ZNF197 28 99.0 Weakly correlated
5 ZNF793 27 99.0 Weakly correlated
6 ZNF766 20 43.0 Weakly correlated
7 ZNF682 18 28.9 Weakly correlated
8 ZNF684 15 99.0 Weakly correlated
9 ZKSCAN8 10 160.0 Weakly correlated
10 ZNF723 10 15.2 Weakly correlated
11 ZNF534 10 19.6 Weakly correlated
12 ZKSCAN1 8 160.0 Weakly correlated
13 ZNF75D 8 94.0 Weakly correlated
14 ZIM3 7 87.0 Weakly correlated
15 ZNF479 6 6.4 Weakly correlated
16 ZNF382 5 99.0 Weakly correlated
17 ZNF597 5 94.0 Weakly correlated
18 ZNF2 4 99.0 Weakly correlated
19 ZNF101 4 43.0 Weakly correlated
20 ZNF680 3 28.9 Weakly correlated
21 ZNF701 2 28.9 Weakly correlated
22 ZNF28 2 28.9 Weakly correlated
23 ZNF251 2 94.0 Weakly correlated
24 ZNF257 2 0.0 Weakly correlated
25 ZNF695 2 28.9 Weakly correlated
26 ZFP57 1 87.0 Weakly correlated
27 ZNF850 1 28.9 Weakly correlated
28 ZNF320 1 28.9 Weakly correlated
29 ZNF263 1 180.0 Weakly correlated
30 ZNF468 1 28.9 Weakly correlated
31 ZNF679 1 28.9 Weakly correlated
32 ZNF133 1 99.0 Weakly correlated
33 ZNF567 1 99.0 Weakly correlated
34 ZNF506 1 28.9 Weakly correlated
35 ZNF554 1 99.0 Weakly correlated
36 ZNF224 1 69.0 Moderately correlated
37 ZNF641 1 99.0 Weakly correlated
38 ZNF486 1 8.6 Weakly correlated
39 ZNF485 1 94.0 Weakly correlated
40 ZNF273 1 28.9 Weakly correlated
41 ZNF264 1 99.0 Weakly correlated
42 ZNF350 1 99.0 Weakly correlated
43 ZNF484 1 99.0 Weakly correlated
44 ZNF549 1 87.0 Weakly correlated
45 ZNF75A 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF479 6.4 Weakly correlated
4 ZNF584 99.0 Weakly correlated
5 ZNF589 28.9 Weakly correlated
6 ZNF682 28.9 Weakly correlated
7 ZNF684 99.0 Weakly correlated
8 ZNF723 15.2 Weakly correlated
9 ZNF75D 94.0 Weakly correlated
10 ZNF793 99.0 Weakly correlated