ZRdb KZFP & Repeats
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LTR_MER41A

  • Name
    MER41A
  • Repbase
    MER41A
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000760
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtcagaggcgtntgaaccagagcaactccatcttgaataggagctgggtaaaatgaggctgagacctactgggctgcattcccagacggttaaggcattctaagtcacaggatgagataggaggtcggcacaagatacaggtcataaagaccttgctgataaaacaggttgcagtaaagaagccggccaaaacccaccaaaaccaagatggcgacgagagtgacctctggtcgtcctcactgctacactcccaccagcgccatgacagtttacaaatgccatggcaacgtcaggaagttaccctatatggtctaaaaaggggaggcatgaataatccaccccttgtttagcatatcatcaagaaataaccataaaaatgggcaaccagcagccctcggggctgctctgtctatggagtagccattcttttattcctttactttcttaataaacttgctttcactttactctgtggactcgccctgaattctttcttgcgcgagatccaagaaccctctcttggggtctggatcgggacccctttcctgtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 497 43.0 Weakly correlated
2 ZNF175 455 94.0 Weakly correlated
3 ZNF589 390 28.9 Weakly correlated
4 ZNF584 343 99.0 Weakly correlated
5 ZNF197 278 99.0 Weakly correlated
6 ZKSCAN8 266 160.0 Weakly correlated
7 ZNF382 101 99.0 Weakly correlated
8 ZNF793 41 99.0 Weakly correlated
9 ZNF394 34 99.0 Weakly correlated
10 ZKSCAN1 29 160.0 Weakly correlated
11 ZNF679 21 28.9 Weakly correlated
12 ZNF479 18 6.4 Weakly correlated
13 ZFP37 18 99.0 Weakly correlated
14 ZNF723 16 15.2 Weakly correlated
15 ZNF2 15 99.0 Weakly correlated
16 ZNF701 14 28.9 Weakly correlated
17 ZNF18 14 160.0 Weakly correlated
18 ZFP69B 11 99.0 Weakly correlated
19 ZNF324 10 99.0 Weakly correlated
20 ZNF558 10 99.0 Weakly correlated
21 ZNF695 9 28.9 Weakly correlated
22 ZNF534 9 19.6 Weakly correlated
23 ZNF554 9 99.0 Weakly correlated
24 ZNF75D 9 94.0 Weakly correlated
25 ZNF610 9 28.9 Weakly correlated
26 ZNF441 8 43.0 Weakly correlated
27 ZNF263 7 180.0 Weakly correlated
28 ZNF101 6 43.0 Weakly correlated
29 ZNF680 6 28.9 Weakly correlated
30 ZNF251 6 94.0 Weakly correlated
31 ZNF140 6 99.0 Weakly correlated
32 ZNF284 5 43.0 Weakly correlated
33 ZNF486 5 8.6 Weakly correlated
34 ZNF506 5 28.9 Weakly correlated
35 ZNF585B 5 99.0 Weakly correlated
36 ZNF257 5 0.0 Weakly correlated
37 ZFP57 5 87.0 Weakly correlated
38 ZNF597 4 94.0 Weakly correlated
39 ZNF320 4 28.9 Weakly correlated
40 ZNF317 4 99.0 Weakly correlated
41 ZNF202 4 160.0 Weakly correlated
42 ZNF485 4 94.0 Weakly correlated
43 ZIM3 4 87.0 Weakly correlated
44 ZNF585A 3 99.0 Weakly correlated
45 ZNF92 3 28.9 Weakly correlated
46 ZNF528 3 43.0 Weakly correlated
47 ZNF182 3 99.0 Weakly correlated
48 ZNF519 2 19.6 Weakly correlated
49 ZNF8 2 99.0 Weakly correlated
50 ZNF133 2 99.0 Weakly correlated
51 ZNF730 2 19.6 Weakly correlated
52 ZNF705B 2 28.9 Weakly correlated
53 ZNF700 2 28.9 Weakly correlated
54 ZNF684 2 99.0 Weakly correlated
55 ZNF287 2 99.0 Weakly correlated
56 ZNF649 2 28.9 Weakly correlated
57 ZNF616 2 43.0 Weakly correlated
58 ZNF611 2 19.6 Weakly correlated
59 ZNF28 2 28.9 Weakly correlated
60 ZNF490 2 43.0 Weakly correlated
61 ZNF578 2 15.2 Weakly correlated
62 ZNF562 2 28.9 Weakly correlated
63 ZNF780A 1 43.0 Weakly correlated
64 ZNF189 1 99.0 Weakly correlated
65 ZNF547 1 74.0 Highly correlated
66 ZNF445 1 99.0 Weakly correlated
67 ZNF530 1 28.9 Weakly correlated
68 ZNF160 1 74.0 Highly correlated
69 ZNF141 1 43.0 Weakly correlated
70 ZNF778 1 74.0 Highly correlated
71 ZNF248 1 99.0 Weakly correlated
72 ZNF468 1 28.9 Weakly correlated
73 ZNF823 1 43.0 Weakly correlated
74 ZNF850 1 28.9 Weakly correlated
75 ZNF878 1 43.0 Weakly correlated
76 ZKSCAN5 1 160.0 Weakly correlated
77 ZNF549 1 87.0 Weakly correlated
78 ZNF429 1 28.9 Weakly correlated
79 ZNF440 1 28.9 Weakly correlated
80 ZNF273 1 28.9 Weakly correlated
81 ZNF43 1 43.0 Weakly correlated
82 ZNF677 1 99.0 Weakly correlated
83 ZNF674 1 99.0 Weakly correlated
84 ZNF641 1 99.0 Weakly correlated
85 ZNF563 1 28.9 Weakly correlated
86 ZNF568 1 99.0 Weakly correlated
87 ZNF343 1 74.0 Highly correlated
88 ZNF350 1 99.0 Weakly correlated
89 ZNF37A 1 99.0 Weakly correlated
90 ZNF383 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 22 99.0 Weakly correlated
2 ZNF584 15 99.0 Weakly correlated
3 ZNF175 13 94.0 Weakly correlated
4 ZNF589 12 28.9 Weakly correlated
5 ZNF197 11 99.0 Weakly correlated
6 ZNF723 10 15.2 Weakly correlated
7 ZNF479 9 6.4 Weakly correlated
8 ZKSCAN1 5 160.0 Weakly correlated
9 ZNF766 5 43.0 Weakly correlated
10 ZNF75D 5 94.0 Weakly correlated
11 ZNF695 5 28.9 Weakly correlated
12 ZNF101 3 43.0 Weakly correlated
13 ZNF554 2 99.0 Weakly correlated
14 ZNF585A 2 99.0 Weakly correlated
15 ZNF382 2 99.0 Weakly correlated
16 ZNF257 2 0.0 Weakly correlated
17 ZNF202 2 160.0 Weakly correlated
18 ZFP37 2 99.0 Weakly correlated
19 ZNF534 2 19.6 Weakly correlated
20 ZNF18 2 160.0 Weakly correlated
21 ZNF611 1 19.6 Weakly correlated
22 ZNF530 1 28.9 Weakly correlated
23 ZNF287 1 99.0 Weakly correlated
24 ZNF324 1 99.0 Weakly correlated
25 ZNF506 1 28.9 Weakly correlated
26 ZNF680 1 28.9 Weakly correlated
27 ZNF468 1 28.9 Weakly correlated
28 ZNF684 1 99.0 Weakly correlated
29 ZNF610 1 28.9 Weakly correlated
30 ZNF549 1 87.0 Weakly correlated
31 ZNF2 1 99.0 Weakly correlated
32 ZNF440 1 28.9 Weakly correlated
33 ZNF597 1 94.0 Weakly correlated
34 ZNF350 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF584 99.0 Weakly correlated
4 ZNF589 28.9 Weakly correlated
5 ZNF723 15.2 Weakly correlated
6 ZNF793 99.0 Weakly correlated