ZRdb KZFP & Repeats
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LTR_MER41-INT

  • Name
    MER41-INT
  • Repbase
    MER41I
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000765
Description :

MER41-int is associated with MER41 LTRs. The reconstruction ofMER41-int is incomplete. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tctttctggcgaaccacgaagggacgatactgaggagacccccncgacccaaaggaaatagactgcagcaccgattggccgactttgggtaagtggtggggtatntnacccgggtaaaggatgggattgggttagaggcccaacttaggggagttagagtctctcctaagacagagngggttaaaggcccctcttaataaaaggcaaggacgcttgaccgaacttgggttngaggcccaacttaggagggttagagtccctcctaagatttagggggttagaggcccctctcggtaaagtccctctcggctaagaacgggtttggcactacgggatgttaactgctattctctttggattaatctgccttgcactctttgctgacggctgtgggtgacaggattaggcatgtacaggatcgtgggacatggggagctttttcctccccaaaaggggaaacttgagagctgatgggactgctggaaaagatcccttcgcgaccgacaagcggccgcctgaacttttgattcagtgtcgctgcaatgggtgggtctttctctggcctccctgagcncctcgccttccccaccctgccgcaggcaatgcttttctccctctctctctcctttccctttcctatcttttctgttactcagggcgaccatcttgcccagagaccacatgttgaaactcctggtcggaggtcgnnncgnnncgnnncgnntggattaaagatgacggggcccanccgggggcaagtttgagccttgccagtttgatattgggtgctaagcagagtggctaatgtctatgttttgtcacacgtattttgctctggccagaacggaaaangntaattcggttcccccatgcagcccgttgggcggcatcttgcaaaattgagaggcttttgcctgtggttccatgaaacggaaaaagaaattttcctttgtgntgcggcttggcccccagggctatggtgcggcgagcngggtcactagggccgctcagggaaagggaacccagaagcctggcatgccggcaaaagggtaagaatttcttaccagtcagacttctggcctctctctctctgtgcaaaccggttgaatgaatggtaaaaatcactgtttatctcctctgtaaagttttgattaatgggaaaaaggattcgtgaggctagtcttaagctgtagcgaatctggtgtgctttgtgctatgaatttgtctttctgtatcgttctgtcataaagaggggtaccttaggatagaacgcgggcttaggacccctgtaagcccgctgttcaagacggcccagcaaactggtcagttacaaactttgctgcaggtccctgaaacaaaaactggatgaggtttccctctcgtcttgttttatgtccttgggagcttgaccttgtaaccacgtggcggtactttctcttggtctccgccatccagggaacaggaattttggggttcatgtcatagttagccctaaaaattatcttgagcagttaaaagcctttgcaagctcaaaattggctgctctaggctccttctgggaagggcaatggaaactgcccagtgctgtagctcagtagctaaggctttgccttttcacaatggcggcccgggttcaattcccggcttagggaatgagtcctttctggtttgatatctgcgtgacctttgccatttgttgattctcttccctnctccatgaacaacttctgacttcccgtcttgaattttcctttctctgagctacctnggaggttctagatcttgtaaaaactgcttaccacctctttgaaaatacctcgtacactcgtggttaagtcataaccttagttaaggcttattggtttcacctgggaggttacctttggtaaagttcaaaagccagaaatattggccgtttggcctggctaaagtcgggtaataagagatttaaaaggacttttttaaagagtgctatggttaaaagtcagcttaattaaaagcggatattcaagctntacatatatttaaaaggcctttatgttttttctcttcttggatcttgtttttctgaaaaaaagtttttttcttctcagtcgactgaattgtttttctccattttgtcttcttgccactcttgatgcacacatgagaggacctaagataacttctaacagcctgggactccttgggaaaaacagaggaggcgccacagaccccgttttgggaaaaacctctgttttcctcatgaaaccccaggaattgaaagcggatagatccctctcaaaatctaaggctctgttctgttttgcattgcgttatctgacgtttttgacttttgggggtatcagaaattacttcgcattatgagagagctttcgnnnncggtgtgtaataactaggtaggaaatatacttttggggatggctaatggcagttatgggggatactcggctctttgcacgtttggatcagagaagcatgctcttggccacctagaaggtatggaaacgtccccaccccccactgagagataagactcccatgggggatgggctgattccctctttttngggatccaggatccggtataaaaatgggacccttaattttggggatctgttttgccttccagctgtgcctgcttattaggccctagaaactgcatgctttcctggccctgttcctccaagggctccaccctgaagccagtaatccaattaagaaacttaaaaactggcaaatgaaaaatcttacaactactggatcttctgtctgtctgtgtatttatatgtgttgtgtgtgtgatgtttatatatgaaagagctctgattaattggcttaaaaataataagcgcttaaatcaaatattttgtcagaaaagtaaaaantgtaatgccttttagttcacgtgactttagtaatctttgggaaataaagacagttttaaagattattggtaaaataaaaatgtcttcaaaatgtagacatttggtctaaattatgcaggtcagatattaggtttgctaaatgctttaaggtcataaactgcttctttgacttttgaaaattgttcaacttacctgctttggagccattagattctaggtaaggcctggggacatgtggagttagccacgccccctagctatgctggaaagagtcagaccttatctgcacttctgtctggtgtcctaggctccacacctagtacataattaaaatcgcttacttaccaggtttttcaccaaaagtaaaagttgctaagagttaacattgtaacatgtaattgagactactgaagaaacagttttacatgcaaggtgtgtaaggaaagtaaaatgtgtttttggtaaaagattataagaaggcatgggaatgtggattttttttgcctagnttagagggttaaaggattgttttaagttagataggataaagctgaaggtttgagcaagttgtggaaggtttgtgaaaaattaatcttgtaaaagaaattctgtgtgtgaacatattggctaaagttaaaggggtattattcagtttttccgtaaattgaacattggaataaaagcacaacagggttttcttagagcactgatctgctctttaacaaaaanttgtaaagggttataaaaggtttatgagaatcttaccttatggtcaaactgattaagattggatagatttgtctataaggttttattaagaattgggtttgacattaatagtacactaatgcaaaggtgaaatttggctttctctcttgaacaagattttcatgtaatattaaaagataatgaaagatttttgtttgccttttgaataaactacagaaaaaagaagggaagaaaagagacattgtttggaaagctaagtcttccctctatcaatgagtaaaggtttttgcctttttaaaatttttgagttatcattttggctaaatgaatgacttatggtgacctgggattctattttataatatcaagtgttttaaacctttganatatttgacaaactttccaaaatcaaattntaaattatgtctttttctgacctaattaatcttttagatattaggtcccctaaagtccaaaagtganatattggcttatttggtataaaaatcatacaggaagcattgtcaaatatgaaatggtgtttggctttctttgggctgtatttgtataaatatgttattggtatgtgttccaaaattatgggaaactcctataattctgatatgacttagtgtatgttattaataattataattgttatgtaaaattattgtatgccacagaagtaaccaaatttccttgtcaattgtgnctttaacngtggctgtcctaagactttttgtcatccacagacaattgttgtcttgttttgatcctcttcaaaaggtggtttataatcagctataggactctgacaggtgctcttaaatgcaggtttctgataactttggagattgtgacattagaatagaggaaaaaactttcaggactctcatggagagctgaaatgttcatgaatatcaagcagaacaggagttaactgcatggactgaactaatagaagactgaagtaatctttttgactttttgcttaaaacgttgctgatcctttgttttgtttttcagagtcaaggaaacttttcttttgagctatttacagcttttaacaattgagtaaagtatactcctgtgaacaaaatttggagcatatttgtttctctctacctgatttctccagaatttggaaactatttgtgagtattcttaacttatggcaatatagttatttgcataagtgcaataagaatctgttttcttttgcaacaggacacaattggagaaactggttattttaccaaggctttgactggaatggcgtgctttcctttaaggaatcaaacttgacttgtagagccaataaaagccccttgggaaaactggcctcataccttgtctacacagtccctgtacagggttcctgacctgtggtaagtaaagaatgtcactttctgacaggcccaggagccccaagttatcttgggacctcaagaggagaggaatttacccaactcataggtatttgagggtacaaacccatggctgggctcggctttaaaaaagtcttatctgagattccttctatggaacagagttccatcaaagccaatttaaaaagagcctatgtgaaaaataattattcttgctgcactttatacaaataatcaggccaagtataataannnnnnnnnnncgcgagcaaatcggtcttaccatgatttgtctttagtaaaaatgggaaactggagagagaaaaattatgtttcaagaactatggtacacctgttattagattctagtctcatcagttgtttttaagtttttttctgcaatttagactaaccctgcttattcctgtgaaccaaccagtgatctctggctgctgctcagaagaaacaagagggatgggtaatgtaaaaatctggatcagtattctaattctgggcacgtattggaatcagctagcaaccccatatcagcttggttccaacagttgcccagttcatggaaagccttctnatttagtttacttgggataattttacttattttgctttactgttgtggaatatattgctgttgtactctttgtgtaggaatgcaggataagcttactgaatgttttcttaaattgaacacttattaatcttccagatatcaccttttgtcggaactcaagagttatgaatggccctcaccataccgacgctttctgactgagctcctctctaccctgaatacaagagaccctaatagttaggcaggaatatcatcgcccctattcagcctgaagaagttacagaagatggatcttcgtccctctgcaacccttaggattaagggttctcttataaaagggaggggggaaata
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 300 8.6 Weakly correlated
2 ZNF85 135 28.9 Weakly correlated
3 ZNF43 126 43.0 Weakly correlated
4 ZNF766 87 43.0 Weakly correlated
5 ZNF589 64 28.9 Weakly correlated
6 ZNF175 62 94.0 Weakly correlated
7 ZNF584 47 99.0 Weakly correlated
8 ZKSCAN8 42 160.0 Weakly correlated
9 ZNF382 35 99.0 Weakly correlated
10 ZNF197 33 99.0 Weakly correlated
11 ZNF793 32 99.0 Weakly correlated
12 ZNF549 27 87.0 Weakly correlated
13 ZNF680 24 28.9 Weakly correlated
14 ZNF317 21 99.0 Weakly correlated
15 ZNF679 18 28.9 Weakly correlated
16 ZNF816 14 28.9 Weakly correlated
17 ZNF479 13 6.4 Weakly correlated
18 ZNF595 13 43.0 Weakly correlated
19 ZNF534 12 19.6 Weakly correlated
20 ZNF547 12 74.0 Highly correlated
21 ZNF506 11 28.9 Weakly correlated
22 ZNF394 11 99.0 Weakly correlated
23 ZNF554 11 99.0 Weakly correlated
24 ZNF324 10 99.0 Weakly correlated
25 ZNF558 10 99.0 Weakly correlated
26 ZNF723 10 15.2 Weakly correlated
27 ZKSCAN1 10 160.0 Weakly correlated
28 ZNF274 10 99.0 Weakly correlated
29 ZNF140 9 99.0 Weakly correlated
30 ZNF705B 9 28.9 Weakly correlated
31 ZNF616 7 43.0 Weakly correlated
32 ZNF257 7 0.0 Weakly correlated
33 ZNF18 7 160.0 Weakly correlated
34 ZNF597 6 94.0 Weakly correlated
35 ZNF485 6 94.0 Weakly correlated
36 ZNF528 5 43.0 Weakly correlated
37 ZNF705D 4 28.9 Weakly correlated
38 ZFP57 4 87.0 Weakly correlated
39 ZNF610 4 28.9 Weakly correlated
40 ZNF251 4 94.0 Weakly correlated
41 ZNF445 4 99.0 Weakly correlated
42 ZNF248 4 99.0 Weakly correlated
43 ZNF701 3 28.9 Weakly correlated
44 ZNF8 3 99.0 Weakly correlated
45 ZNF441 3 43.0 Weakly correlated
46 ZNF429 3 28.9 Weakly correlated
47 ZNF425 3 94.0 Weakly correlated
48 ZNF707 3 74.0 Highly correlated
49 ZNF671 3 94.0 Weakly correlated
50 ZNF33A 3 99.0 Weakly correlated
51 ZNF28 3 28.9 Weakly correlated
52 ZNF735 2 28.9 Weakly correlated
53 ZNF736 2 43.0 Weakly correlated
54 ZNF778 2 74.0 Highly correlated
55 ZFP37 2 99.0 Weakly correlated
56 ZNF182 2 99.0 Weakly correlated
57 ZNF263 2 180.0 Weakly correlated
58 ZNF468 2 28.9 Weakly correlated
59 ZNF169 2 94.0 Weakly correlated
60 ZNF2 2 99.0 Weakly correlated
61 ZNF124 1 43.0 Weakly correlated
62 ZNF17 1 69.0 Moderately correlated
63 ZNF141 1 43.0 Weakly correlated
64 ZNF780A 1 43.0 Weakly correlated
65 ZNF789 1 99.0 Weakly correlated
66 ZNF792 1 94.0 Weakly correlated
67 ZNF92 1 28.9 Weakly correlated
68 ZNF101 1 43.0 Weakly correlated
69 ZNF823 1 43.0 Weakly correlated
70 ZNF845 1 28.9 Weakly correlated
71 ZIM3 1 87.0 Weakly correlated
72 ZFP28 1 99.0 Weakly correlated
73 ZNF91 1 6.0 Weakly correlated
74 ZNF557 1 15.2 Weakly correlated
75 ZNF224 1 69.0 Moderately correlated
76 ZNF716 1 19.6 Weakly correlated
77 ZNF26 1 99.0 Weakly correlated
78 ZNF284 1 43.0 Weakly correlated
79 ZNF287 1 99.0 Weakly correlated
80 ZNF695 1 28.9 Weakly correlated
81 ZNF334 1 99.0 Weakly correlated
82 ZNF33B 1 99.0 Weakly correlated
83 ZNF669 1 43.0 Weakly correlated
84 ZNF347 1 43.0 Weakly correlated
85 ZNF34 1 99.0 Weakly correlated
86 ZNF605 1 99.0 Weakly correlated
87 ZNF418 1 43.0 Weakly correlated
88 ZNF519 1 19.6 Weakly correlated
89 ZNF585A 1 99.0 Weakly correlated
90 ZNF530 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF43 116 43.0 Weakly correlated
2 ZNF85 94 28.9 Weakly correlated
3 ZNF793 18 99.0 Weakly correlated
4 ZNF549 14 87.0 Weakly correlated
5 ZNF595 12 43.0 Weakly correlated
6 ZNF766 9 43.0 Weakly correlated
7 ZNF816 9 28.9 Weakly correlated
8 ZNF479 9 6.4 Weakly correlated
9 ZNF257 6 0.0 Weakly correlated
10 ZNF506 6 28.9 Weakly correlated
11 ZNF534 6 19.6 Weakly correlated
12 ZNF723 5 15.2 Weakly correlated
13 ZNF485 4 94.0 Weakly correlated
14 ZNF616 4 43.0 Weakly correlated
15 ZNF140 4 99.0 Weakly correlated
16 ZNF680 3 28.9 Weakly correlated
17 ZNF486 3 8.6 Weakly correlated
18 ZFP57 3 87.0 Weakly correlated
19 ZNF589 3 28.9 Weakly correlated
20 ZNF558 2 99.0 Weakly correlated
21 ZNF597 2 94.0 Weakly correlated
22 ZNF679 2 28.9 Weakly correlated
23 ZNF735 2 28.9 Weakly correlated
24 ZNF705B 2 28.9 Weakly correlated
25 ZNF705D 2 28.9 Weakly correlated
26 ZNF468 2 28.9 Weakly correlated
27 ZNF671 1 94.0 Weakly correlated
28 ZNF429 1 28.9 Weakly correlated
29 ZNF251 1 94.0 Weakly correlated
30 ZNF382 1 99.0 Weakly correlated
31 ZNF530 1 28.9 Weakly correlated
32 ZNF707 1 74.0 Highly correlated
33 ZNF528 1 43.0 Weakly correlated
34 ZNF792 1 94.0 Weakly correlated
35 ZNF317 1 99.0 Weakly correlated
36 ZIM3 1 87.0 Weakly correlated
37 ZNF101 1 43.0 Weakly correlated
38 ZNF141 1 43.0 Weakly correlated
39 ZNF18 1 160.0 Weakly correlated
40 ZNF716 1 19.6 Weakly correlated
41 ZFP28 1 99.0 Weakly correlated
42 ZNF554 1 99.0 Weakly correlated
43 ZNF287 1 99.0 Weakly correlated
44 ZNF695 1 28.9 Weakly correlated
45 ZNF584 1 99.0 Weakly correlated
46 ZNF175 1 94.0 Weakly correlated
47 ZNF197 1 99.0 Weakly correlated
48 ZNF780A 1 43.0 Weakly correlated
49 ZNF28 1 28.9 Weakly correlated
50 ZNF33B 1 99.0 Weakly correlated
51 ZNF585A 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF43 43.0 Weakly correlated
3 ZNF506 28.9 Weakly correlated
4 ZNF534 19.6 Weakly correlated
5 ZNF595 43.0 Weakly correlated
6 ZNF766 43.0 Weakly correlated
7 ZNF793 99.0 Weakly correlated
8 ZNF816 28.9 Weakly correlated
9 ZNF85 28.9 Weakly correlated