ZRdb KZFP & Repeats
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LTR_MER4-INT

  • Name
    MER4-INT
  • Repbase
    MER4I
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000806
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tggtaaccacggaagggattctgagtggaggtgcccctgacctttgacaaatctcctatcggtgcttggtaccagcntgagctaactttatggcncgnncccgnnncgtctttatngctcaaaccaataggacaatttgctgaggtctgggagcaccnccctccagagaatccctgatctcccaaaatttggtcgagatctaaagtttattttgctgtacaactcctctttttttggagttttacttgcttccaacacgaggaaggcaagtttttcctgcttccatgacgatggaaggcaggtaactcctttatggagtttgagctcgcttccaacagggaagacgagttttttttcctgcttctaggatggtagagagcagtcttcagcctgagacccatccctaggtaagtagctgaattggggtttgtcttggnnnntnnnnntnntggctaaangttaagattaacaaccttggaanttctccttanngactnaaagttaagattaacaaccagctggtcttaatttctccttaccattagagcgctcagtaatcatataagttgtgcgatcgtttgttttgcttaactgtttttgtttttgttgtttttgtttgtttctgtttttgttgttgtttcggtctttttcccattgggtttgaccaactctatccgacttgatcantncgncgnnnnnnnnaaancgnccgncgaaaggaannaancgannccgnnnantntgactaccaaatccgaaggagagttccaaattatggggaacaaggcctctgaagtggctaaattcccacaaaaaaaaaaaaaaanaaaaaaaaaacaaggccanctttttgctagccaggccaaactgaaagagcaatggctgtcgccccacgctgcagttccatagctaaggttctgccttcttttttttttncaccacgacagcctgggtttggttcctaaatcaagccctttctggtttgatacttggtacttctgaaatagcagcaatttgtcctagctgaaatatggtaatgagatttaaaaagatttttttaaaggagctcaatggttaaaagtcagcttaattaaaaggctaacatccaagatgtgtgtgtgtatgtgtgcgtgtgtatgtgtgcatgtgtgcgtgtttgtatttaaaaggccttcatgtttttgttttntcgtttgtttttctctcctaggaccttgtctttttttgagcaaagtttttttcttctcagttgactgaattctgttttcttcatttacttctgnnccgnnctgtctctcctttctcttgccaccctctgcngcacgtgangggacctaaaatagntttataatagcctggggttccttaaagaaaacggagaanggcgccagnnactcccttttggggagaaacctctgtttttccttatggaaccccaagagtngtaaacagacaagttcgtctcagctcttaaactncgcttgcttttgtattgtgttacctgattttttgactaaaatagttattgcaacagaggctactcttgggtttttaaggaagagtgtagtttagacacttagaaatgtctttgtttaaaaatttaagtgcactgtaaaagcatcacgtggtctagcctcataataattctccctttttggagacccaggattcagtgtgggctctgcccagagctcagagatccagttaaaaataggtagtccctatctaaataaaattggtctccttatacaatcctatgatagatttctataattttatgtttaatttggcatcaatctttaatctccctctagcaccaccagactttttctctctgtaccttatgatgtaaattttgctatttgattttncacctnngagttgtttcctttaatatgcaaatttaaggctatttagctgacaactgcctagggtngtgaaacaggttatcaagaatttgaaagtctaagataggaaaaaaaggaggtcttatgaatctataagatgtacttctatcggcatgcctaatacgtctatgtatttatgtgttgtgtacacaatgtttcactactaaaaatatataaaagagctctaattaattggcttaaagaaaaataaaagcgcttaaatcaaatactttatcaggaaaaaagaaaagactagtcaaatgctttttcaagttcgcgnnncgnnnnnncgnnnntatgtaacttaagtaaaatctttaataaataagctagctttaaaattattggtaaagtaatattagaaatgtcttaagaattgccagcatacatttttgtttgcattntattaatcaagcaatttcatacttatccctgccaaatactataanggtgtcaaaatttggcataggggttacaaaactataaacccagcccaaaacagaatgatctttgcttgtgtaatttttaataaataagacattgatattggtttaatgaaaatagctacatcttgaatttagtaagattaccntnacntntaancncgcgnnnnnnnncgnnnnnnnncgcgcgcgnnnnnnnnnnncgnnnnnnnnnnnnncgnncgcgnncgccgnnncgnnnnnncgnnnnncgnnncgnnnnnnncgnnnnnnnnnnnnnnnnncgnnnncgnnnnncgncgnnnccgnnnnnnnncgnncgncgccgnnnnnnnnncgnnnncgccgnncgncgnnnccgnnnnnncgncgnnncgncgnnncgataactttaaatgatgactatcgcagttttcataaataatctaggtaaacgattaataaaataattaggtaaatgtaatgggataaatacttgtagacaaactcgtcataatttagaatctaaagttatattaaattaaataatagatatttcattatttgggtattttccaataaaaatatattgtaggaaaacattctttctnaaaaaaaagtgtgtcctttttaaaaaannggtgaacaatttttgtctaattcaaagcttatttaaaggttatgtataaaacaaggtaaaaggaaccaggaaataagagagatgtaaagaaagttataaaaataaagaggtattttttgtnggtaagaaagcttaaagagaaataattttatatgagaaagaatcttgtatggtaaatttacgnnnnnnnnnnncgnncgnnnnnnnnncgtcctagaataaaatgactggtttttaagaaagaggatgttcaggacaaaccagaaagtccaagcatgtcatgaatggtctgtgtaagtcacaataagatttatataaaaaaaaattaaaaanttttatatgatcaagttgtctataattaaagggaaattatnnnnaatggtctttctagagattgnggtttgatgtnaaaaanacacttatacactaaaaattggttagaacaataaaattttcttaagggattgatttactcttaaaattataagagattttaattttaacccaaaagttcaacttttattgcatctcgccgttttcgngctttctctccccttttaaaaggcctgaaataataacnctctccttcaactcatttntcagctcntgtaattttttcctcgggttctaactgttgttgtggcctgatgctaaaaatgttttatcttaaaggtctaaaggaaatgttttcttccaacataatattctgtgctctncttnncttgncgnntttaaattgttctatgaaaccggaaantttcacttatgacccaggacacactcttccttgtctaactaattcaagtaccnttttcattagtttgacttcaggttatctaaaggactccccatagggaacagcagtcgcactgcagaaggtttttcttttgccttttggtaactggcctaacaaanagattttacgttttatcgaaataattcctatgccattattattaagttttcggtttgcttaggaaaactgagattaaaattttttaaattaaggttattacatccgtgtatctttctgtattgcttttaaagtccttgtgacattgagttacagggctttgactcctgggtctaaaaaggacaccaagtcctgctaaatcttaaacactgacagcaattaaagcctcatcttcaggcccgtagaagatgccaatcaaaataaactgcattcctgagacacaggaaattaaagctattcaactcctcaaggcccagggactatccggaagaggtgggcgcgtgagattgtaagggccgattttgagagataaaataagttcancgnnnnnncgnnnnnnnnncgnnnnnngtttctctataaattaatcattaatgtcaaaggcacactgatgcaagaccagcatatgggcccctgtgtcagattaacaaggttttcttgaagcattaaccgactccttaataaaggttataaaggttataaaaggcttatggaagttatatcttatggtcaagattaaaattttatagattgtttataaaattttgaaaaacaaatttaattggcttcatgctgtttttattagggcttattgtttggaaaattaagtctcctctctcaaagaatgaaggttttcgccttttttgaaatccttgagttatcactttggttaaatgaatgacttattttacaatgacctgtgatcctattttgtgatatcaagtgttttaaacctttgatatttgacaaactttccaaaatcaaattataaattatgtctttctgacctaattaatcctttaagatattaggttccctaaagtccaaaaatgacataatttggcttatttggtataaaaattatacaggaagcattgtcaaatatgaaaggtgtttggttttctttgggctgtatttgtataaatatgttattggtatgtgttccaaaattatgggaaactcctataattctgatatgacttagtgtacgttatcagtaataattataattgttatgttaaattattgtgtgccacagaggtaacnaaatttccttgtcaattgtgtctttgactatggctgccctaaaacttttgtcatccacggacaattgttttgttttggtcctctttagaaggtggtttataatcagctataaaactctaacaggtgctcttgaatgcaggtttctgataactttggagattgtgacatcagaatagaggaaaaactttcaggactcatggagagctgaaatgttcatgaatatcgncgnnccgncgncgnncaagcagaacaggaattaactgcatggactgaactaatagaagactgaagtaatctttttgactttttgcttaaaacgttgctgatcctttgttttgtttttcagagtcaagaaaacttttcttttgagctattgacagcttttaacaattgagtatagtatactcctatgaacaaaatttggagcatatttgtttctctctacctgatttctccagaatttggaaactatttgtgagtattcttaacttatggcaatacagttatttgcataagtgcaataagaatctgttttcatttgtaacaggacacaattggagaaactggttattttaccaaggctttgactggaatggtgtgctttcctttaaggaatcaaacttgacttatggagccaataaaagcccttgggaaaactggcctcataccttgtctacacagtccctgtacagggttcctgacctgtggtaagtaaagaatgtcactttctgacaggcccaggagccccaagtttatcttggaacctcaagaggagaggaanttcacccaactcataggtatttgatggcacaaatccatggctgggctcggctttaaaaaagtcttatctgagattccttctatggaacaaagttccatcaaagccaatttaaaaanngcctatgtaaaaaataattattcttgctgcactntatacaaataatcaggccaagtataataannncgnnncccgnnncgcgagcaaatcggtcctaccatgatttgtctttagtaaaaatgggaaactggagagagaaaaattatgtttcaaaaactatagtacacctgttgttagattctagttgtttttcaatttttattattttctacagtttggaccgaattctaanntttttcttggctacaagtcttcaaaataatgttttcaatnntttttctttttttccttcctttttccccatttttcctaatttggagtcactgaaaactaangctgtgcttntcttaaagccctgcgaactgaagctagacaacttaaacttcagaagaaaataacagcaacctatttacatacataagccactttcatacctgcctactgatgtatggacttcagagtaatgtggcctatatcgattttccaggattgttcttttgtttgttgttgtttttctcccttcctccccctattttctcttcataggacatgagacttcacaacctgctaaaaatgagctttcctaataactcgggacctacccgtctaggaataaaccatcctagccatgagagatcagacgaaacctgagaccagagactcattttcttctaaaatgctttctccaaaagattttaaaaaagaagggaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 244 8.6 Weakly correlated
2 ZNF43 134 43.0 Weakly correlated
3 ZNF85 126 28.9 Weakly correlated
4 ZNF680 88 28.9 Weakly correlated
5 ZNF382 80 99.0 Weakly correlated
6 ZNF766 78 43.0 Weakly correlated
7 ZNF793 52 99.0 Weakly correlated
8 ZIM3 46 87.0 Weakly correlated
9 ZNF18 40 160.0 Weakly correlated
10 ZNF610 40 28.9 Weakly correlated
11 ZNF324 37 99.0 Weakly correlated
12 ZNF175 35 94.0 Weakly correlated
13 ZNF2 35 99.0 Weakly correlated
14 ZNF317 32 99.0 Weakly correlated
15 ZNF547 32 74.0 Highly correlated
16 ZFP69B 27 99.0 Weakly correlated
17 ZNF394 25 99.0 Weakly correlated
18 ZFP37 24 99.0 Weakly correlated
19 ZNF707 24 74.0 Highly correlated
20 ZKSCAN1 23 160.0 Weakly correlated
21 ZNF558 23 99.0 Weakly correlated
22 ZNF182 20 99.0 Weakly correlated
23 ZNF440 20 28.9 Weakly correlated
24 ZNF679 20 28.9 Weakly correlated
25 ZNF8 20 99.0 Weakly correlated
26 ZNF202 17 160.0 Weakly correlated
27 ZNF792 17 94.0 Weakly correlated
28 ZNF140 15 99.0 Weakly correlated
29 ZNF506 15 28.9 Weakly correlated
30 ZNF534 15 19.6 Weakly correlated
31 ZNF554 15 99.0 Weakly correlated
32 ZNF585B 15 99.0 Weakly correlated
33 ZNF589 15 28.9 Weakly correlated
34 ZNF263 14 180.0 Weakly correlated
35 ZNF584 14 99.0 Weakly correlated
36 ZNF101 13 43.0 Weakly correlated
37 ZNF197 13 99.0 Weakly correlated
38 ZNF723 13 15.2 Weakly correlated
39 ZKSCAN8 11 160.0 Weakly correlated
40 ZNF264 11 99.0 Weakly correlated
41 ZNF705B 11 28.9 Weakly correlated
42 ZNF251 10 94.0 Weakly correlated
43 ZNF28 10 28.9 Weakly correlated
44 ZNF549 10 87.0 Weakly correlated
45 ZNF597 10 94.0 Weakly correlated
46 ZNF441 9 43.0 Weakly correlated
47 ZNF705D 9 28.9 Weakly correlated
48 ZNF641 8 99.0 Weakly correlated
49 ZNF274 7 99.0 Weakly correlated
50 ZNF658 7 99.0 Weakly correlated
51 ZNF701 7 28.9 Weakly correlated
52 ZNF320 6 28.9 Weakly correlated
53 ZNF354C 6 99.0 Weakly correlated
54 ZNF485 6 94.0 Weakly correlated
55 ZNF490 6 43.0 Weakly correlated
56 ZNF528 6 43.0 Weakly correlated
57 ZNF248 5 99.0 Weakly correlated
58 ZNF479 5 6.4 Weakly correlated
59 ZNF519 5 19.6 Weakly correlated
60 ZNF816 5 28.9 Weakly correlated
61 ZNF585A 4 99.0 Weakly correlated
62 ZNF823 4 43.0 Weakly correlated
63 ZNF169 3 94.0 Weakly correlated
64 ZNF33A 3 99.0 Weakly correlated
65 ZNF595 3 43.0 Weakly correlated
66 ZNF671 3 94.0 Weakly correlated
67 ZNF677 3 99.0 Weakly correlated
68 ZNF695 3 28.9 Weakly correlated
69 ZNF878 3 43.0 Weakly correlated
70 ZNF141 2 43.0 Weakly correlated
71 ZNF222 2 43.0 Weakly correlated
72 ZNF225 2 74.0 Highly correlated
73 ZNF230 2 28.9 Weakly correlated
74 ZNF257 2 0.0 Weakly correlated
75 ZNF273 2 28.9 Weakly correlated
76 ZNF350 2 99.0 Weakly correlated
77 ZNF41 2 99.0 Weakly correlated
78 ZNF433 2 43.0 Weakly correlated
79 ZNF468 2 28.9 Weakly correlated
80 ZNF471 2 94.0 Weakly correlated
81 ZNF510 2 99.0 Weakly correlated
82 ZNF544 2 0.0 Weakly correlated
83 ZNF562 2 28.9 Weakly correlated
84 ZNF682 2 28.9 Weakly correlated
85 ZNF736 2 43.0 Weakly correlated
86 ZNF77 2 87.0 Weakly correlated
87 ZNF813 2 28.9 Weakly correlated
88 ZNF879 2 99.0 Weakly correlated
89 ZNF92 2 28.9 Weakly correlated
90 ZFP30 1 99.0 Weakly correlated
91 ZFP57 1 87.0 Weakly correlated
92 ZNF100 1 28.9 Weakly correlated
93 ZNF135 1 94.0 Weakly correlated
94 ZNF157 1 99.0 Weakly correlated
95 ZNF17 1 69.0 Moderately correlated
96 ZNF189 1 99.0 Weakly correlated
97 ZNF284 1 43.0 Weakly correlated
98 ZNF287 1 99.0 Weakly correlated
99 ZNF337 1 43.0 Weakly correlated
100 ZNF354A 1 99.0 Weakly correlated
101 ZNF418 1 43.0 Weakly correlated
102 ZNF425 1 94.0 Weakly correlated
103 ZNF429 1 28.9 Weakly correlated
104 ZNF555 1 94.0 Weakly correlated
105 ZNF563 1 28.9 Weakly correlated
106 ZNF669 1 43.0 Weakly correlated
107 ZNF681 1 28.9 Weakly correlated
108 ZNF700 1 28.9 Weakly correlated
109 ZNF75D 1 94.0 Weakly correlated
110 ZNF778 1 74.0 Highly correlated
111 ZNF786 1 99.0 Weakly correlated
112 ZNF791 1 87.0 Weakly correlated
113 ZNF799 1 43.0 Weakly correlated
114 ZNF850 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF43 126 43.0 Weakly correlated
2 ZNF85 90 28.9 Weakly correlated
3 ZNF793 35 99.0 Weakly correlated
4 ZIM3 24 87.0 Weakly correlated
5 ZNF680 16 28.9 Weakly correlated
6 ZNF547 14 74.0 Highly correlated
7 ZNF792 13 94.0 Weakly correlated
8 ZNF202 12 160.0 Weakly correlated
9 ZNF534 10 19.6 Weakly correlated
10 ZNF766 9 43.0 Weakly correlated
11 ZNF101 7 43.0 Weakly correlated
12 ZNF264 6 99.0 Weakly correlated
13 ZNF597 6 94.0 Weakly correlated
14 ZNF558 6 99.0 Weakly correlated
15 ZNF354C 5 99.0 Weakly correlated
16 ZNF641 5 99.0 Weakly correlated
17 ZNF382 5 99.0 Weakly correlated
18 ZNF701 4 28.9 Weakly correlated
19 ZNF485 4 94.0 Weakly correlated
20 ZNF263 3 180.0 Weakly correlated
21 ZNF140 3 99.0 Weakly correlated
22 ZNF677 2 99.0 Weakly correlated
23 ZNF705D 2 28.9 Weakly correlated
24 ZNF705B 2 28.9 Weakly correlated
25 ZNF225 2 74.0 Highly correlated
26 ZNF468 2 28.9 Weakly correlated
27 ZNF471 2 94.0 Weakly correlated
28 ZNF317 2 99.0 Weakly correlated
29 ZNF585A 2 99.0 Weakly correlated
30 ZNF273 2 28.9 Weakly correlated
31 ZNF479 2 6.4 Weakly correlated
32 ZNF695 2 28.9 Weakly correlated
33 ZNF197 2 99.0 Weakly correlated
34 ZNF287 1 99.0 Weakly correlated
35 ZNF707 1 74.0 Highly correlated
36 ZNF816 1 28.9 Weakly correlated
37 ZNF251 1 94.0 Weakly correlated
38 ZNF141 1 43.0 Weakly correlated
39 ZNF28 1 28.9 Weakly correlated
40 ZNF736 1 43.0 Weakly correlated
41 ZNF175 1 94.0 Weakly correlated
42 ZNF320 1 28.9 Weakly correlated
43 ZNF440 1 28.9 Weakly correlated
44 ZNF8 1 99.0 Weakly correlated
45 ZNF584 1 99.0 Weakly correlated
46 ZNF610 1 28.9 Weakly correlated
47 ZNF595 1 43.0 Weakly correlated
48 ZNF589 1 28.9 Weakly correlated
49 ZNF506 1 28.9 Weakly correlated
50 ZNF350 1 99.0 Weakly correlated
51 ZNF486 1 8.6 Weakly correlated
52 ZNF823 1 43.0 Weakly correlated
53 ZNF510 1 99.0 Weakly correlated
54 ZNF679 1 28.9 Weakly correlated
55 ZNF723 1 15.2 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Weakly correlated
2 ZNF101 43.0 Weakly correlated
3 ZNF202 160.0 Weakly correlated
4 ZNF43 43.0 Weakly correlated
5 ZNF558 99.0 Weakly correlated
6 ZNF597 94.0 Weakly correlated
7 ZNF680 28.9 Weakly correlated
8 ZNF766 43.0 Weakly correlated
9 ZNF793 99.0 Weakly correlated
10 ZNF85 28.9 Weakly correlated