ZRdb KZFP & Repeats
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LTR_MER39B

  • Name
    MER39B
  • Repbase
    MER39B
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000759
Description :

MER39B has 4 bp TSDs. It is a variant of MER39; both are members of aclosely interrelated group of LTRs including MER21, MER34, LTR29, LTR48and LTR49. Original orientation has been changed. Note that MER standsfor MEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttggggctcagaaaacaataccccaaaatgaaggcctcagaagcagcctcagaagcaaaagtttttctctgaccttctcctgccctcctgtctctcagtcccattctcccccgaggctagccatagaaactagaatccctcttccccaaggcgggtcatagaaaccagaaccccttttccccaaagccagccataaaacctaaaaatattactctaactttccctccgcctttctgtgtaaaaactggccataaagaaattatctgacctaccttgtttgactgtaggtcataagacccccattccagagagggtcctgccccacacccagaaggaaggaatgcatgctcagagaggccaagaagaatctagacagacaggccttgctgggtttccccactcagtctattagcattagatcataccctttttgtccaatcatatttctacacggctgtccatactttgttgaacctaagcataaaaatggacaatttcccctgtatctttgggtcttcattctgaaggctcccgtgtatatacatgttaaataaatttgtatgccttttctccnattaatctgccttttgtnagttgatttttcagcgaaccttcagagggcnaaggggaagttttcccttggcccctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 353 28.9 Weakly correlated
2 ZNF766 27 43.0 Weakly correlated
3 ZNF382 24 99.0 Weakly correlated
4 ZIM3 20 87.0 Weakly correlated
5 ZNF793 16 99.0 Weakly correlated
6 ZNF534 14 19.6 Weakly correlated
7 ZNF175 12 94.0 Weakly correlated
8 ZNF394 12 99.0 Weakly correlated
9 ZNF584 11 99.0 Weakly correlated
10 ZNF589 11 28.9 Weakly correlated
11 ZNF701 11 28.9 Weakly correlated
12 ZNF18 9 160.0 Weakly correlated
13 ZNF263 9 180.0 Weakly correlated
14 ZNF479 9 6.4 Weakly correlated
15 ZNF679 9 28.9 Weakly correlated
16 ZFP37 8 99.0 Weakly correlated
17 ZKSCAN1 8 160.0 Weakly correlated
18 ZNF197 8 99.0 Weakly correlated
19 ZNF705B 8 28.9 Weakly correlated
20 ZNF101 7 43.0 Weakly correlated
21 ZNF597 6 94.0 Weakly correlated
22 ZNF705D 6 28.9 Weakly correlated
23 ZNF723 6 15.2 Weakly correlated
24 ZNF140 5 99.0 Weakly correlated
25 ZNF324 5 99.0 Weakly correlated
26 ZNF441 5 43.0 Weakly correlated
27 ZNF547 5 74.0 Highly correlated
28 ZNF610 5 28.9 Weakly correlated
29 ZFP57 4 87.0 Weakly correlated
30 ZFP69B 4 99.0 Weakly correlated
31 ZKSCAN8 4 160.0 Weakly correlated
32 ZNF264 4 99.0 Weakly correlated
33 ZNF28 4 28.9 Weakly correlated
34 ZNF320 4 28.9 Weakly correlated
35 ZNF528 4 43.0 Weakly correlated
36 ZNF682 4 28.9 Weakly correlated
37 ZNF141 3 43.0 Weakly correlated
38 ZNF202 3 160.0 Weakly correlated
39 ZNF257 3 0.0 Weakly correlated
40 ZNF2 3 99.0 Weakly correlated
41 ZNF317 3 99.0 Weakly correlated
42 ZNF331 3 94.0 Weakly correlated
43 ZNF419 3 28.9 Weakly correlated
44 ZNF486 3 8.6 Weakly correlated
45 ZNF641 3 99.0 Weakly correlated
46 ZNF695 3 28.9 Weakly correlated
47 ZNF707 3 74.0 Highly correlated
48 ZNF792 3 94.0 Weakly correlated
49 ZNF8 3 99.0 Weakly correlated
50 ZNF92 3 28.9 Weakly correlated
51 ZNF100 2 28.9 Weakly correlated
52 ZNF169 2 94.0 Weakly correlated
53 ZNF211 2 94.0 Weakly correlated
54 ZNF26 2 99.0 Weakly correlated
55 ZNF274 2 99.0 Weakly correlated
56 ZNF282 2 319.0 Weakly correlated
57 ZNF287 2 99.0 Weakly correlated
58 ZNF354C 2 99.0 Weakly correlated
59 ZNF418 2 43.0 Weakly correlated
60 ZNF480 2 43.0 Weakly correlated
61 ZNF485 2 94.0 Weakly correlated
62 ZNF549 2 87.0 Weakly correlated
63 ZNF585B 2 99.0 Weakly correlated
64 ZNF605 2 99.0 Weakly correlated
65 ZNF674 2 99.0 Weakly correlated
66 ZNF681 2 28.9 Weakly correlated
67 ZNF716 2 19.6 Weakly correlated
68 ZNF735 2 28.9 Weakly correlated
69 ZNF747 2 43.0 Weakly correlated
70 ZNF778 2 74.0 Highly correlated
71 ZNF823 2 43.0 Weakly correlated
72 RBAK 1 99.0 Weakly correlated
73 ZFP14 1 99.0 Weakly correlated
74 ZFP69 1 99.0 Weakly correlated
75 ZFP90 1 99.0 Weakly correlated
76 ZIK1 1 87.0 Weakly correlated
77 ZIM2 1 0.0 Weakly correlated
78 ZKSCAN2 1 180.0 Weakly correlated
79 ZKSCAN3 1 99.0 Weakly correlated
80 ZKSCAN5 1 160.0 Weakly correlated
81 ZNF114 1 28.9 Weakly correlated
82 ZNF124 1 43.0 Weakly correlated
83 ZNF12 1 99.0 Weakly correlated
84 ZNF132 1 94.0 Weakly correlated
85 ZNF133 1 99.0 Weakly correlated
86 ZNF135 1 94.0 Weakly correlated
87 ZNF136 1 74.0 Highly correlated
88 ZNF154 1 94.0 Weakly correlated
89 ZNF157 1 99.0 Weakly correlated
90 ZNF17 1 69.0 Moderately correlated
91 ZNF180 1 99.0 Weakly correlated
92 ZNF181 1 94.0 Weakly correlated
93 ZNF182 1 99.0 Weakly correlated
94 ZNF184 1 99.0 Weakly correlated
95 ZNF189 1 99.0 Weakly correlated
96 ZNF212 1 160.0 Weakly correlated
97 ZNF214 1 99.0 Weakly correlated
98 ZNF222 1 43.0 Weakly correlated
99 ZNF223 1 43.0 Weakly correlated
100 ZNF225 1 74.0 Highly correlated
101 ZNF235 1 99.0 Weakly correlated
102 ZNF248 1 99.0 Weakly correlated
103 ZNF251 1 94.0 Weakly correlated
104 ZNF254 1 43.0 Weakly correlated
105 ZNF267 1 43.0 Weakly correlated
106 ZNF273 1 28.9 Weakly correlated
107 ZNF284 1 43.0 Weakly correlated
108 ZNF300 1 99.0 Weakly correlated
109 ZNF302 1 43.0 Weakly correlated
110 ZNF304 1 99.0 Weakly correlated
111 ZNF30 1 94.0 Weakly correlated
112 ZNF311 1 99.0 Weakly correlated
113 ZNF324B 1 99.0 Weakly correlated
114 ZNF333 1 99.0 Weakly correlated
115 ZNF334 1 99.0 Weakly correlated
116 ZNF337 1 43.0 Weakly correlated
117 ZNF33A 1 99.0 Weakly correlated
118 ZNF343 1 74.0 Highly correlated
119 ZNF350 1 99.0 Weakly correlated
120 ZNF354B 1 99.0 Weakly correlated
121 ZNF37A 1 99.0 Weakly correlated
122 ZNF383 1 99.0 Weakly correlated
123 ZNF398 1 99.0 Weakly correlated
124 ZNF3 1 160.0 Weakly correlated
125 ZNF41 1 99.0 Weakly correlated
126 ZNF425 1 94.0 Weakly correlated
127 ZNF429 1 28.9 Weakly correlated
128 ZNF430 1 19.6 Weakly correlated
129 ZNF431 1 28.9 Weakly correlated
130 ZNF432 1 99.0 Weakly correlated
131 ZNF436 1 180.0 Weakly correlated
132 ZNF439 1 8.6 Weakly correlated
133 ZNF442 1 43.0 Weakly correlated
134 ZNF445 1 99.0 Weakly correlated
135 ZNF454 1 99.0 Weakly correlated
136 ZNF45 1 99.0 Weakly correlated
137 ZNF483 1 99.0 Weakly correlated
138 ZNF484 1 99.0 Weakly correlated
139 ZNF490 1 43.0 Weakly correlated
140 ZNF506 1 28.9 Weakly correlated
141 ZNF525 1 19.6 Weakly correlated
142 ZNF527 1 99.0 Weakly correlated
143 ZNF529 1 99.0 Weakly correlated
144 ZNF530 1 28.9 Weakly correlated
145 ZNF540 1 87.0 Weakly correlated
146 ZNF543 1 99.0 Weakly correlated
147 ZNF548 1 94.0 Weakly correlated
148 ZNF550 1 94.0 Weakly correlated
149 ZNF552 1 28.9 Weakly correlated
150 ZNF554 1 99.0 Weakly correlated
151 ZNF555 1 94.0 Weakly correlated
152 ZNF557 1 15.2 Weakly correlated
153 ZNF558 1 99.0 Weakly correlated
154 ZNF561 1 43.0 Weakly correlated
155 ZNF562 1 28.9 Weakly correlated
156 ZNF565 1 99.0 Weakly correlated
157 ZNF566 1 99.0 Weakly correlated
158 ZNF567 1 99.0 Weakly correlated
159 ZNF570 1 99.0 Weakly correlated
160 ZNF573 1 94.0 Weakly correlated
161 ZNF57 1 28.9 Weakly correlated
162 ZNF582 1 99.0 Weakly correlated
163 ZNF585A 1 99.0 Weakly correlated
164 ZNF587 1 28.9 Weakly correlated
165 ZNF607 1 43.0 Weakly correlated
166 ZNF611 1 19.6 Weakly correlated
167 ZNF613 1 99.0 Weakly correlated
168 ZNF614 1 99.0 Weakly correlated
169 ZNF615 1 99.0 Weakly correlated
170 ZNF616 1 43.0 Weakly correlated
171 ZNF620 1 99.0 Weakly correlated
172 ZNF626 1 0.0 Weakly correlated
173 ZNF649 1 28.9 Weakly correlated
174 ZNF671 1 94.0 Weakly correlated
175 ZNF675 1 8.6 Weakly correlated
176 ZNF69 1 28.9 Weakly correlated
177 ZNF705G 1 28.9 Weakly correlated
178 ZNF730 1 19.6 Weakly correlated
179 ZNF737 1 28.9 Weakly correlated
180 ZNF74 1 99.0 Weakly correlated
181 ZNF75A 1 94.0 Weakly correlated
182 ZNF75D 1 94.0 Weakly correlated
183 ZNF763 1 15.2 Weakly correlated
184 ZNF764 1 160.0 Weakly correlated
185 ZNF765 1 8.6 Weakly correlated
186 ZNF776 1 43.0 Weakly correlated
187 ZNF777 1 319.0 Weakly correlated
188 ZNF780A 1 43.0 Weakly correlated
189 ZNF782 1 99.0 Weakly correlated
190 ZNF785 1 94.0 Weakly correlated
191 ZNF786 1 99.0 Weakly correlated
192 ZNF789 1 99.0 Weakly correlated
193 ZNF791 1 87.0 Weakly correlated
194 ZNF799 1 43.0 Weakly correlated
195 ZNF808 1 19.6 Weakly correlated
196 ZNF816 1 28.9 Weakly correlated
197 ZNF81 1 99.0 Weakly correlated
198 ZNF846 1 74.0 Highly correlated
199 ZNF84 1 99.0 Weakly correlated
200 ZNF85 1 28.9 Weakly correlated
201 ZNF860 1 0.0 Weakly correlated
202 ZNF878 1 43.0 Weakly correlated
203 ZNF879 1 99.0 Weakly correlated
204 ZNF880 1 28.9 Weakly correlated
205 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 150 28.9 Weakly correlated
2 ZNF793 7 99.0 Weakly correlated
3 ZNF534 7 19.6 Weakly correlated
4 ZIM3 7 87.0 Weakly correlated
5 ZNF479 4 6.4 Weakly correlated
6 ZNF705B 2 28.9 Weakly correlated
7 ZNF701 2 28.9 Weakly correlated
8 ZNF597 2 94.0 Weakly correlated
9 ZNF101 2 43.0 Weakly correlated
10 ZNF257 2 0.0 Weakly correlated
11 ZNF735 1 28.9 Weakly correlated
12 ZNF530 1 28.9 Weakly correlated
13 ZNF212 1 160.0 Weakly correlated
14 ZNF723 1 15.2 Weakly correlated
15 ZNF641 1 99.0 Weakly correlated
16 ZNF567 1 99.0 Weakly correlated
17 ZNF382 1 99.0 Weakly correlated
18 ZNF26 1 99.0 Weakly correlated
19 ZNF317 1 99.0 Weakly correlated
20 ZNF607 1 43.0 Weakly correlated
21 ZNF846 1 74.0 Highly correlated
22 ZNF766 1 43.0 Weakly correlated
23 ZNF28 1 28.9 Weakly correlated
24 ZNF141 1 43.0 Weakly correlated
25 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF534 19.6 Weakly correlated
2 ZNF680 28.9 Weakly correlated