ZRdb KZFP & Repeats
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LTR_MER39

  • Name
    MER39
  • Repbase
    MER39
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000758
Description :

MER39 has 4 bp TSDs, and is a member of a closely interrelated group ofLTRs including MER21, MER34, LTR29, LTR48 and LTR49. Originalorientation has been changed. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttggggctcagaanacgataccccaaagtatggcgccttggcatgctgagtactttgaactgaaggagattggaaggcctcagaagcagcctcagaagcaaagtctctctctgaccttctcccgccctcctgtctcccgcccccgttctctcctccccgaagcgagtcatagaaaccagaattcctcttccccaaggcgggtcatagaaactagaacccctctcccccaaagcaagccataaaacctagaaangtcactctgaccttcccccgcctttctgtntnggagcnggccataaagaaattctctgacctnccttgtctganagtaggtcataagaccctcattccagaaggggtcctgccctatacccgggaggaaggaatgctacacagagaggccaagaagaatctgaacagacaggccttgctgggtttccccnctcagtttattaccattagatcataccccttttgtccaatcacatttctncacgactgtccattcttcatcgaacctaagcataaaaatanagttttccctgngtctttgggtcttcatttctgaaggctcccgtgtcacgtaaaactttgattaaataaatttgttatgcttttctcttgttaatctgtcttttgttataggggtgtcggccgtganccttgcgatgggtaggaaaggtatcacacctttctncccctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 431 28.9 Weakly correlated
2 ZNF382 62 99.0 Weakly correlated
3 ZNF766 46 43.0 Weakly correlated
4 ZNF679 36 28.9 Weakly correlated
5 ZNF534 32 19.6 Weakly correlated
6 ZNF394 31 99.0 Weakly correlated
7 ZNF263 27 180.0 Weakly correlated
8 ZNF589 27 28.9 Weakly correlated
9 ZNF101 24 43.0 Weakly correlated
10 ZNF175 24 94.0 Weakly correlated
11 ZNF257 24 0.0 Weakly correlated
12 ZIM3 21 87.0 Weakly correlated
13 ZNF705B 20 28.9 Weakly correlated
14 ZNF75D 17 94.0 Weakly correlated
15 ZNF584 15 99.0 Weakly correlated
16 ZNF317 15 99.0 Weakly correlated
17 ZNF133 14 99.0 Weakly correlated
18 ZKSCAN1 14 160.0 Weakly correlated
19 ZFP37 14 99.0 Weakly correlated
20 ZNF701 14 28.9 Weakly correlated
21 ZNF485 13 94.0 Weakly correlated
22 ZKSCAN8 13 160.0 Weakly correlated
23 ZNF18 12 160.0 Weakly correlated
24 ZNF705D 10 28.9 Weakly correlated
25 ZNF735 9 28.9 Weakly correlated
26 ZNF793 9 99.0 Weakly correlated
27 ZNF320 9 28.9 Weakly correlated
28 ZNF2 8 99.0 Weakly correlated
29 ZFP69B 8 99.0 Weakly correlated
30 ZNF597 7 94.0 Weakly correlated
31 ZNF558 7 99.0 Weakly correlated
32 ZNF197 7 99.0 Weakly correlated
33 ZNF324 7 99.0 Weakly correlated
34 ZNF723 6 15.2 Weakly correlated
35 ZNF425 6 94.0 Weakly correlated
36 ZNF506 6 28.9 Weakly correlated
37 ZNF28 6 28.9 Weakly correlated
38 ZNF479 5 6.4 Weakly correlated
39 ZNF274 5 99.0 Weakly correlated
40 ZNF549 5 87.0 Weakly correlated
41 ZNF554 5 99.0 Weakly correlated
42 ZNF429 5 28.9 Weakly correlated
43 ZNF92 5 28.9 Weakly correlated
44 ZNF610 4 28.9 Weakly correlated
45 ZNF486 4 8.6 Weakly correlated
46 ZNF251 4 94.0 Weakly correlated
47 ZFP57 3 87.0 Weakly correlated
48 ZNF471 3 94.0 Weakly correlated
49 ZNF792 3 94.0 Weakly correlated
50 ZNF786 3 99.0 Weakly correlated
51 ZNF441 3 43.0 Weakly correlated
52 ZNF141 3 43.0 Weakly correlated
53 ZNF41 3 99.0 Weakly correlated
54 ZNF585B 3 99.0 Weakly correlated
55 ZNF607 3 43.0 Weakly correlated
56 ZNF490 2 43.0 Weakly correlated
57 ZNF84 2 99.0 Weakly correlated
58 ZNF823 2 43.0 Weakly correlated
59 ZNF140 2 99.0 Weakly correlated
60 ZNF716 2 19.6 Weakly correlated
61 ZNF675 2 8.6 Weakly correlated
62 ZNF33A 2 99.0 Weakly correlated
63 ZNF528 2 43.0 Weakly correlated
64 ZNF605 2 99.0 Weakly correlated
65 ZNF736 1 43.0 Weakly correlated
66 ZNF484 1 99.0 Weakly correlated
67 ZNF91 1 6.0 Weakly correlated
68 ZNF8 1 99.0 Weakly correlated
69 ZNF878 1 43.0 Weakly correlated
70 ZNF519 1 19.6 Weakly correlated
71 ZNF816 1 28.9 Weakly correlated
72 ZKSCAN5 1 160.0 Weakly correlated
73 ZNF468 1 28.9 Weakly correlated
74 ZNF445 1 99.0 Weakly correlated
75 ZNF780A 1 43.0 Weakly correlated
76 ZNF136 1 74.0 Highly correlated
77 ZNF436 1 180.0 Weakly correlated
78 ZNF75A 1 94.0 Weakly correlated
79 ZNF567 1 99.0 Weakly correlated
80 ZNF182 1 99.0 Weakly correlated
81 ZNF585A 1 99.0 Weakly correlated
82 ZNF202 1 160.0 Weakly correlated
83 ZNF586 1 43.0 Weakly correlated
84 ZNF264 1 99.0 Weakly correlated
85 ZNF273 1 28.9 Weakly correlated
86 ZNF283 1 99.0 Weakly correlated
87 ZNF677 1 99.0 Weakly correlated
88 ZNF671 1 94.0 Weakly correlated
89 ZNF616 1 43.0 Weakly correlated
90 ZNF304 1 99.0 Weakly correlated
91 ZNF331 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 179 28.9 Weakly correlated
2 ZNF534 17 19.6 Weakly correlated
3 ZNF257 12 0.0 Weakly correlated
4 ZNF101 11 43.0 Weakly correlated
5 ZIM3 10 87.0 Weakly correlated
6 ZNF485 9 94.0 Weakly correlated
7 ZNF263 9 180.0 Weakly correlated
8 ZNF133 8 99.0 Weakly correlated
9 ZNF735 6 28.9 Weakly correlated
10 ZNF75D 6 94.0 Weakly correlated
11 ZNF589 5 28.9 Weakly correlated
12 ZNF701 4 28.9 Weakly correlated
13 ZNF705D 3 28.9 Weakly correlated
14 ZNF793 3 99.0 Weakly correlated
15 ZNF317 3 99.0 Weakly correlated
16 ZNF679 3 28.9 Weakly correlated
17 ZNF506 3 28.9 Weakly correlated
18 ZNF28 2 28.9 Weakly correlated
19 ZNF549 2 87.0 Weakly correlated
20 ZNF320 2 28.9 Weakly correlated
21 ZNF585B 2 99.0 Weakly correlated
22 ZNF766 2 43.0 Weakly correlated
23 ZNF141 2 43.0 Weakly correlated
24 ZNF140 2 99.0 Weakly correlated
25 ZFP57 2 87.0 Weakly correlated
26 ZNF84 1 99.0 Weakly correlated
27 ZFP37 1 99.0 Weakly correlated
28 ZNF558 1 99.0 Weakly correlated
29 ZNF554 1 99.0 Weakly correlated
30 ZNF792 1 94.0 Weakly correlated
31 ZNF175 1 94.0 Weakly correlated
32 ZNF823 1 43.0 Weakly correlated
33 ZNF705B 1 28.9 Weakly correlated
34 ZNF605 1 99.0 Weakly correlated
35 ZNF382 1 99.0 Weakly correlated
36 ZNF429 1 28.9 Weakly correlated
37 ZNF723 1 15.2 Weakly correlated
38 ZNF528 1 43.0 Weakly correlated
39 ZNF18 1 160.0 Weakly correlated
40 ZNF675 1 8.6 Weakly correlated
41 ZNF584 1 99.0 Weakly correlated
42 ZNF33A 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF680 28.9 Weakly correlated
4 ZNF75D 94.0 Weakly correlated