ZRdb KZFP & Repeats
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LTR_MER34D

  • Name
    MER34D
  • Repbase
    MER34D
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000756
Description :

Possibly present in rodents as well. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaggagtgaaggacgtgccatcccaaaatatgccggattggtatattgattatttcgagttgaaaacattggagaaattgtagtttcagaaagggctagctgacctgtctcttcctgcatgcagcaagccataaagattcctctgggaggggtaccctccccgtaccagggcgagaaaatagcccttatcaccagagactgggaattggggctgcaatggacctgaataaatatacttancgaagtaacccttatcttccactagttttacacccctccccatatatctcctagtgactcccctagaaatttactgcccctagccagatcccctttgtcctgtcatttcttctcaaatttatcgttctttgtctaaaaagtataaaagcatcttgctttggccacttcttcggancttcactctcttgtgaagatccccatgtacatgtaaaactaataaaatttgtatgcttttctcttgttaatctgcctggtgtcaatttggtttctagatccagccgaagagcccacataagagctaaaaggggggttggaggtgatctctggctcccctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 26 99.0 Weakly correlated
2 ZNF766 17 43.0 Weakly correlated
3 ZNF394 12 99.0 Weakly correlated
4 ZFP37 9 99.0 Weakly correlated
5 ZKSCAN8 7 160.0 Weakly correlated
6 ZNF101 7 43.0 Weakly correlated
7 ZKSCAN1 6 160.0 Weakly correlated
8 ZNF589 6 28.9 Weakly correlated
9 ZNF558 5 99.0 Weakly correlated
10 ZNF680 5 28.9 Weakly correlated
11 ZNF282 4 319.0 Weakly correlated
12 ZNF610 4 28.9 Weakly correlated
13 ZNF679 4 28.9 Weakly correlated
14 ZNF324 4 99.0 Weakly correlated
15 ZNF175 4 94.0 Weakly correlated
16 ZNF18 4 160.0 Weakly correlated
17 ZNF197 4 99.0 Weakly correlated
18 ZFP69B 3 99.0 Weakly correlated
19 ZNF547 3 74.0 Highly correlated
20 ZNF140 3 99.0 Weakly correlated
21 ZNF2 3 99.0 Weakly correlated
22 ZNF793 2 99.0 Weakly correlated
23 ZNF705D 2 28.9 Weakly correlated
24 ZNF705B 2 28.9 Weakly correlated
25 ZNF257 2 0.0 Weakly correlated
26 ZNF468 2 28.9 Weakly correlated
27 ZNF141 2 43.0 Weakly correlated
28 ZNF274 2 99.0 Weakly correlated
29 ZNF584 2 99.0 Weakly correlated
30 ZNF263 2 180.0 Weakly correlated
31 ZNF8 1 99.0 Weakly correlated
32 ZNF587 1 28.9 Weakly correlated
33 ZNF563 1 28.9 Weakly correlated
34 ZNF554 1 99.0 Weakly correlated
35 ZNF534 1 19.6 Weakly correlated
36 ZNF519 1 19.6 Weakly correlated
37 ZNF486 1 8.6 Weakly correlated
38 ZNF479 1 6.4 Weakly correlated
39 ZNF44 1 43.0 Weakly correlated
40 ZNF425 1 94.0 Weakly correlated
41 ZNF417 1 28.9 Weakly correlated
42 ZNF264 1 99.0 Weakly correlated
43 ZNF202 1 160.0 Weakly correlated
44 ZNF133 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF101 3 43.0 Weakly correlated
2 ZNF140 2 99.0 Weakly correlated
3 ZNF141 2 43.0 Weakly correlated
4 ZNF394 2 99.0 Weakly correlated
5 ZNF534 1 19.6 Weakly correlated
6 ZNF766 1 43.0 Weakly correlated
7 ZNF587 1 28.9 Weakly correlated
8 ZNF175 1 94.0 Weakly correlated
9 ZNF264 1 99.0 Weakly correlated
10 ZNF202 1 160.0 Weakly correlated
11 ZNF417 1 28.9 Weakly correlated
12 ZNF793 1 99.0 Weakly correlated
13 ZNF589 1 28.9 Weakly correlated
14 ZKSCAN1 1 160.0 Weakly correlated
15 ZNF324 1 99.0 Weakly correlated
16 ZNF705D 1 28.9 Weakly correlated
17 ZNF705B 1 28.9 Weakly correlated
18 ZNF2 1 99.0 Weakly correlated
19 ZNF133 1 99.0 Weakly correlated
20 ZKSCAN8 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats