ZRdb KZFP & Repeats
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LTR_MER34C2

  • Name
    MER34C2
  • Repbase
    MER34C2
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000755
Description :

Originally named MER34D (renamed due to a naming clash). Note that MERstands for MEdium Reiteration frequency interspersed repeat. As such,MERs as a group are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttggggctcaggacacaccaccccaaaatatgactgtaggagaccagaatatgccaccccaaaatatacctctttggcatattgattattttgagctggttattctgagaaactgcagacacaggagtagctctgaaaagctgcccttttgtaaaagaaanntttacatctataaaggaaatctncattagtaaaagntatctgtatcaggaagagggctgctccgagacaacttttattacctgagagacttttatctgcataacaagacaacctttattcaccatacatttcctcccctcaccctcccataacttgtctcgccaccaccccccagaagccccaagccctattcctttctgtagctcaggatgctatataagcttcaatcatctggccgcttctttgagtctcatatttttgtgggactcccatgcgtatacgtacgtaattaaaatggtttttctcctgttaatctgtcttatgtcaatttaattcgtagcccagccaaagaacctagaagggtagagggaagccattttcctcccctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF530 21 28.9 Weakly correlated
2 ZNF382 21 99.0 Weakly correlated
3 ZNF766 15 43.0 Weakly correlated
4 ZNF528 13 43.0 Weakly correlated
5 ZNF394 13 99.0 Weakly correlated
6 ZNF589 12 28.9 Weakly correlated
7 ZNF679 10 28.9 Weakly correlated
8 ZNF175 10 94.0 Weakly correlated
9 ZNF680 9 28.9 Weakly correlated
10 ZKSCAN8 7 160.0 Weakly correlated
11 ZNF18 7 160.0 Weakly correlated
12 ZKSCAN1 6 160.0 Weakly correlated
13 ZFP37 6 99.0 Weakly correlated
14 ZNF584 5 99.0 Weakly correlated
15 ZNF317 5 99.0 Weakly correlated
16 ZNF263 5 180.0 Weakly correlated
17 ZNF793 5 99.0 Weakly correlated
18 ZNF197 5 99.0 Weakly correlated
19 ZNF101 4 43.0 Weakly correlated
20 ZNF2 4 99.0 Weakly correlated
21 ZNF282 3 319.0 Weakly correlated
22 ZNF211 3 94.0 Weakly correlated
23 ZNF324 3 99.0 Weakly correlated
24 ZIM3 3 87.0 Weakly correlated
25 ZNF558 3 99.0 Weakly correlated
26 ZNF792 3 94.0 Weakly correlated
27 ZNF490 3 43.0 Weakly correlated
28 ZNF610 2 28.9 Weakly correlated
29 ZNF597 2 94.0 Weakly correlated
30 ZNF701 2 28.9 Weakly correlated
31 ZNF682 2 28.9 Weakly correlated
32 ZNF735 2 28.9 Weakly correlated
33 ZNF75D 2 94.0 Weakly correlated
34 ZNF534 2 19.6 Weakly correlated
35 ZFP28 2 99.0 Weakly correlated
36 ZNF257 2 0.0 Weakly correlated
37 ZFP69B 2 99.0 Weakly correlated
38 ZNF133 2 99.0 Weakly correlated
39 ZFP90 1 99.0 Weakly correlated
40 ZNF182 1 99.0 Weakly correlated
41 ZNF695 1 28.9 Weakly correlated
42 ZNF141 1 43.0 Weakly correlated
43 ZNF705B 1 28.9 Weakly correlated
44 ZNF730 1 19.6 Weakly correlated
45 ZKSCAN5 1 160.0 Weakly correlated
46 ZNF248 1 99.0 Weakly correlated
47 ZNF780A 1 43.0 Weakly correlated
48 ZFP14 1 99.0 Weakly correlated
49 ZNF799 1 43.0 Weakly correlated
50 ZNF816 1 28.9 Weakly correlated
51 ZNF823 1 43.0 Weakly correlated
52 ZNF879 1 99.0 Weakly correlated
53 ZNF92 1 28.9 Weakly correlated
54 ZNF506 1 28.9 Weakly correlated
55 ZNF677 1 99.0 Weakly correlated
56 ZNF641 1 99.0 Weakly correlated
57 ZNF26 1 99.0 Weakly correlated
58 ZNF607 1 43.0 Weakly correlated
59 ZNF274 1 99.0 Weakly correlated
60 ZNF28 1 28.9 Weakly correlated
61 ZNF587 1 28.9 Weakly correlated
62 ZNF585A 1 99.0 Weakly correlated
63 ZNF320 1 28.9 Weakly correlated
64 ZNF425 1 94.0 Weakly correlated
65 ZNF547 1 74.0 Highly correlated
66 ZNF442 1 43.0 Weakly correlated
67 ZNF44 1 43.0 Weakly correlated
68 ZNF485 1 94.0 Weakly correlated
69 ZNF519 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF530 20 28.9 Weakly correlated
2 ZNF528 12 43.0 Weakly correlated
3 ZNF589 5 28.9 Weakly correlated
4 ZNF766 4 43.0 Weakly correlated
5 ZNF793 3 99.0 Weakly correlated
6 ZNF175 3 94.0 Weakly correlated
7 ZIM3 2 87.0 Weakly correlated
8 ZNF197 2 99.0 Weakly correlated
9 ZNF735 2 28.9 Weakly correlated
10 ZNF680 2 28.9 Weakly correlated
11 ZNF485 1 94.0 Weakly correlated
12 ZKSCAN8 1 160.0 Weakly correlated
13 ZNF317 1 99.0 Weakly correlated
14 ZNF263 1 180.0 Weakly correlated
15 ZNF701 1 28.9 Weakly correlated
16 ZNF679 1 28.9 Weakly correlated
17 ZFP28 1 99.0 Weakly correlated
18 ZNF780A 1 43.0 Weakly correlated
19 ZNF75D 1 94.0 Weakly correlated
20 ZNF320 1 28.9 Weakly correlated
21 ZNF211 1 94.0 Weakly correlated
22 ZNF44 1 43.0 Weakly correlated
23 ZNF584 1 99.0 Weakly correlated
24 ZNF506 1 28.9 Weakly correlated
25 ZNF282 1 319.0 Weakly correlated
26 ZNF101 1 43.0 Weakly correlated
27 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats