ZRdb KZFP & Repeats
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LTR_MER34B

  • Name
    MER34B
  • Repbase
    MER34B
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000751
Description :

70% similar to MER34 over roughly the entire length. Possibly presentin rodents. Note that MER stands for MEdium Reiteration frequencyinterspersed repeat. As such, MERs as a group are a grab bag of DNAtransposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgggagaccagaatatgccaccccaaaatatgaaggattgttgagctgaaggcaattaagaagaagcagatgcaggaaagctctctgccctccctctatttgcctaaaagcaggacatagatttacaaagacaaaaggtatcccgccccccctctctaccagggagaacaaaggttaaccactgaagacaactttagacccttatcggcctggagatggcaccagaggaatctacattaacaagctttactaactagcctttatctgccatttatttgccttcccacaagttgccgcccctagagactcaaagtccttttcctttgtcttgtcacttctctaaaaatttactgttctttgttgaagatgctatataagctggaattcaaagccacctctttgagaactactcattccctgggtgtctcccatgtatatatgaaatatacatgttaataaacttctgtttgtttttctcttgttaatctgtcttttgttacaggggtccgttccaactaagaacctatgagggttgaggaaaaaattatttttcttcccctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 28 43.0 Weakly correlated
2 ZNF382 14 99.0 Weakly correlated
3 ZNF263 9 180.0 Weakly correlated
4 ZNF589 8 28.9 Weakly correlated
5 ZNF175 8 94.0 Weakly correlated
6 ZNF425 7 94.0 Weakly correlated
7 ZNF534 6 19.6 Weakly correlated
8 ZFP37 6 99.0 Weakly correlated
9 ZIM3 6 87.0 Highly correlated
10 ZNF680 5 28.9 Weakly correlated
11 ZNF394 5 99.0 Weakly correlated
12 ZNF485 4 94.0 Weakly correlated
13 ZNF18 4 160.0 Weakly correlated
14 ZNF705D 4 28.9 Weakly correlated
15 ZNF317 4 99.0 Weakly correlated
16 ZNF584 3 99.0 Weakly correlated
17 ZNF75D 3 94.0 Weakly correlated
18 ZNF528 2 43.0 Weakly correlated
19 ZNF554 2 99.0 Weakly correlated
20 ZNF705B 2 28.9 Weakly correlated
21 ZFP57 2 87.0 Highly correlated
22 ZNF197 2 99.0 Weakly correlated
23 ZNF169 2 94.0 Weakly correlated
24 ZNF101 2 43.0 Weakly correlated
25 ZNF735 1 28.9 Weakly correlated
26 ZNF792 1 94.0 Weakly correlated
27 ZNF701 1 28.9 Weakly correlated
28 ZNF679 1 28.9 Weakly correlated
29 ZNF597 1 94.0 Weakly correlated
30 ZNF793 1 99.0 Weakly correlated
31 ZNF816 1 28.9 Weakly correlated
32 ZNF8 1 99.0 Weakly correlated
33 ZNF92 1 28.9 Weakly correlated
34 ZNF506 1 28.9 Weakly correlated
35 ZNF486 1 8.6 Weakly correlated
36 ZNF479 1 6.4 Weakly correlated
37 ZNF468 1 28.9 Weakly correlated
38 ZNF44 1 43.0 Weakly correlated
39 ZNF429 1 28.9 Weakly correlated
40 ZNF2 1 99.0 Weakly correlated
41 ZNF257 1 0.0 Weakly correlated
42 ZNF251 1 94.0 Weakly correlated
43 ZNF211 1 94.0 Weakly correlated
44 ZNF141 1 43.0 Weakly correlated
45 ZNF140 1 99.0 Weakly correlated
46 ZNF136 1 74.0 Moderately correlated
47 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 7 43.0 Weakly correlated
2 ZNF263 4 180.0 Weakly correlated
3 ZNF425 4 94.0 Weakly correlated
4 ZNF534 4 19.6 Weakly correlated
5 ZIM3 3 87.0 Highly correlated
6 ZNF485 2 94.0 Weakly correlated
7 ZNF589 2 28.9 Weakly correlated
8 ZNF75D 2 94.0 Weakly correlated
9 ZNF175 2 94.0 Weakly correlated
10 ZNF382 1 99.0 Weakly correlated
11 ZFP37 1 99.0 Weakly correlated
12 ZNF793 1 99.0 Weakly correlated
13 ZNF211 1 94.0 Weakly correlated
14 ZNF479 1 6.4 Weakly correlated
15 ZNF735 1 28.9 Weakly correlated
16 ZNF169 1 94.0 Weakly correlated
17 ZNF816 1 28.9 Weakly correlated
18 ZNF680 1 28.9 Weakly correlated
19 ZNF468 1 28.9 Weakly correlated
20 ZNF197 1 99.0 Weakly correlated
21 ZNF141 1 43.0 Weakly correlated
22 ZNF101 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats