ZRdb KZFP & Repeats
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LTR_MER34A1

  • Name
    MER34A1
  • Repbase
    MER34A1
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000750
Description :

Intermediate variant of MER34A and B. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaagggtagcagaatatgccaccccaaaatatgccactttggcataaggattattttgagctgaaggcaattgagaagaagcagatacaagaaaagctctctgccctccccctatttgcctaaaagcaggacataaatttgtaaaggtgtccccctcccctctctaccaggaaggacagaagttaatcaccggagacaactctagacccttatcagcccggagacggcaccagaggaatctacataacaaaccttactaactagcccttatctnccattagtttccccatatatttaccttcccacaatttgccgcccctagaagctcaaagtccttttcctttgtcttgtcacttctctanaaatttattgttctttgtttaagatgctatataagcccaagttctaaccacccctttgagttactcattcnctgagtntctcccatgtgtatgcgcgatgcacatgttaataaacttctgtttgtttttctcttgttaatctgtcttttgtcagtctaatttacagggccccagccanngaacctaagatgggtagaggaaaaagttttttttcctcccctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 34 43.0 Weakly correlated
2 ZNF382 24 99.0 Highly correlated
3 ZNF263 14 180.0 Weakly correlated
4 ZNF680 11 28.9 Weakly correlated
5 ZNF394 10 99.0 Highly correlated
6 ZNF589 9 28.9 Weakly correlated
7 ZNF211 9 94.0 Moderately correlated
8 ZFP37 8 99.0 Highly correlated
9 ZIM3 7 87.0 Moderately correlated
10 ZNF506 6 28.9 Weakly correlated
11 ZNF2 6 99.0 Highly correlated
12 ZNF705B 6 28.9 Weakly correlated
13 ZNF735 6 28.9 Weakly correlated
14 ZNF534 5 19.6 Weakly correlated
15 ZNF317 5 99.0 Highly correlated
16 ZKSCAN8 5 160.0 Weakly correlated
17 ZNF175 5 94.0 Moderately correlated
18 ZNF18 4 160.0 Weakly correlated
19 ZNF679 4 28.9 Weakly correlated
20 ZFP57 4 87.0 Moderately correlated
21 ZNF101 4 43.0 Weakly correlated
22 ZNF701 4 28.9 Weakly correlated
23 ZNF197 4 99.0 Highly correlated
24 ZNF705D 3 28.9 Weakly correlated
25 ZNF324 3 99.0 Highly correlated
26 ZNF75D 3 94.0 Moderately correlated
27 ZNF792 2 94.0 Moderately correlated
28 ZNF257 2 0.0 Weakly correlated
29 ZNF823 2 43.0 Weakly correlated
30 ZFP69B 2 99.0 Highly correlated
31 ZNF486 2 8.6 Weakly correlated
32 ZNF425 2 94.0 Moderately correlated
33 ZNF429 2 28.9 Weakly correlated
34 ZNF584 1 99.0 Highly correlated
35 ZNF92 1 28.9 Weakly correlated
36 ZNF610 1 28.9 Weakly correlated
37 ZNF677 1 99.0 Highly correlated
38 PRDM9 1 0.0 Weakly correlated
39 ZNF816 1 28.9 Weakly correlated
40 ZNF707 1 74.0 Weakly correlated
41 ZNF723 1 15.2 Weakly correlated
42 ZNF273 1 28.9 Weakly correlated
43 ZKSCAN1 1 160.0 Weakly correlated
44 ZKSCAN2 1 180.0 Weakly correlated
45 ZKSCAN5 1 160.0 Weakly correlated
46 ZNF133 1 99.0 Highly correlated
47 ZNF17 1 69.0 Weakly correlated
48 ZNF189 1 99.0 Highly correlated
49 ZNF202 1 160.0 Weakly correlated
50 ZNF264 1 99.0 Highly correlated
51 ZNF528 1 43.0 Weakly correlated
52 ZNF274 1 99.0 Highly correlated
53 ZNF284 1 43.0 Weakly correlated
54 ZNF28 1 28.9 Weakly correlated
55 ZNF331 1 94.0 Moderately correlated
56 ZNF37A 1 99.0 Highly correlated
57 ZNF417 1 28.9 Weakly correlated
58 ZNF485 1 94.0 Moderately correlated
59 ZNF510 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 10 43.0 Weakly correlated
2 ZNF211 7 94.0 Moderately correlated
3 ZNF735 5 28.9 Weakly correlated
4 ZNF263 5 180.0 Weakly correlated
5 ZNF680 4 28.9 Weakly correlated
6 ZIM3 3 87.0 Moderately correlated
7 ZNF75D 3 94.0 Moderately correlated
8 ZNF197 3 99.0 Highly correlated
9 ZNF792 2 94.0 Moderately correlated
10 ZNF701 2 28.9 Weakly correlated
11 ZNF317 2 99.0 Highly correlated
12 ZNF534 2 19.6 Weakly correlated
13 ZNF589 2 28.9 Weakly correlated
14 ZNF175 2 94.0 Moderately correlated
15 ZNF823 1 43.0 Weakly correlated
16 ZNF584 1 99.0 Highly correlated
17 ZNF707 1 74.0 Weakly correlated
18 ZNF485 1 94.0 Moderately correlated
19 ZNF257 1 0.0 Weakly correlated
20 ZNF417 1 28.9 Weakly correlated
21 ZNF18 1 160.0 Weakly correlated
22 ZNF506 1 28.9 Weakly correlated
23 ZNF101 1 43.0 Weakly correlated
24 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF211 94.0 Moderately correlated