ZRdb KZFP & Repeats
...

LTR_MER34A

  • Name
    MER34A
  • Repbase
    MER34A
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000749
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaggggatcagaatatgccaccccaaaatatgccactttggcataaggattattttgagctgaaggcaattgagaaacagcagatgcaggaagagctctctgccctccccctntctgcctaaaagcagggcataaatttccctttgtgaaggtgccctccctgtaccaggaagaggagagcgactcttatcaccggagacggagagtcgacaccgagatgagtctgcataaacaaaccttactaaaataacccttatcttccattagttcccccatatatttcctagtcaccttcccacaatttaccgcccctagaagcccaaaccccttttcctttgtcttgtcacttctccacaatttatcgccctttgttaaaatggtatataagcccccaggtctaaccgcttctttgggttttcacttcttttctgtgaagctcccgtgcacgtaaaatattaaataaaatttgtatgccttttctcctgttaatctgtcttttgtcagtttaattcgcaggcccccagncactgaacctaagagggtagaggaaaagtttttcctcccctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF211 114 94.0 Moderately correlated
2 ZNF766 58 43.0 Weakly correlated
3 ZNF382 42 99.0 Highly correlated
4 ZNF263 19 180.0 Weakly correlated
5 ZNF394 17 99.0 Highly correlated
6 ZNF589 17 28.9 Weakly correlated
7 ZNF175 16 94.0 Moderately correlated
8 ZNF735 15 28.9 Weakly correlated
9 ZKSCAN8 14 160.0 Weakly correlated
10 ZNF18 13 160.0 Weakly correlated
11 ZNF317 11 99.0 Highly correlated
12 ZIM3 10 87.0 Moderately correlated
13 ZNF680 9 28.9 Weakly correlated
14 ZNF197 9 99.0 Highly correlated
15 ZNF75D 9 94.0 Moderately correlated
16 ZFP37 8 99.0 Highly correlated
17 ZNF479 8 6.4 Weakly correlated
18 ZNF584 7 99.0 Highly correlated
19 ZNF274 6 99.0 Highly correlated
20 ZNF705B 6 28.9 Weakly correlated
21 ZNF597 6 94.0 Moderately correlated
22 ZNF723 5 15.2 Weakly correlated
23 ZNF2 5 99.0 Highly correlated
24 ZNF558 4 99.0 Highly correlated
25 ZNF534 4 19.6 Weakly correlated
26 ZNF607 4 43.0 Weakly correlated
27 ZNF485 4 94.0 Moderately correlated
28 ZNF679 4 28.9 Weakly correlated
29 ZNF101 4 43.0 Weakly correlated
30 ZKSCAN1 4 160.0 Weakly correlated
31 ZNF705D 4 28.9 Weakly correlated
32 ZNF554 3 99.0 Highly correlated
33 ZNF324 3 99.0 Highly correlated
34 ZFP69B 3 99.0 Highly correlated
35 ZNF793 3 99.0 Highly correlated
36 ZNF257 3 0.0 Weakly correlated
37 ZNF251 3 94.0 Moderately correlated
38 ZNF248 2 99.0 Highly correlated
39 ZFP57 2 87.0 Moderately correlated
40 ZNF133 2 99.0 Highly correlated
41 ZNF707 2 74.0 Weakly correlated
42 ZNF610 2 28.9 Weakly correlated
43 ZNF141 2 43.0 Weakly correlated
44 ZNF549 2 87.0 Moderately correlated
45 ZNF528 2 43.0 Weakly correlated
46 ZNF28 2 28.9 Weakly correlated
47 ZNF331 2 94.0 Moderately correlated
48 ZNF425 2 94.0 Moderately correlated
49 ZNF778 1 74.0 Weakly correlated
50 ZNF823 1 43.0 Weakly correlated
51 ZNF780A 1 43.0 Weakly correlated
52 ZNF845 1 28.9 Weakly correlated
53 ZNF852 1 94.0 Moderately correlated
54 ZNF92 1 28.9 Weakly correlated
55 ZNF701 1 28.9 Weakly correlated
56 ZNF677 1 99.0 Highly correlated
57 ZNF585B 1 99.0 Highly correlated
58 ZNF506 1 28.9 Weakly correlated
59 ZNF468 1 28.9 Weakly correlated
60 ZNF441 1 43.0 Weakly correlated
61 ZNF429 1 28.9 Weakly correlated
62 ZNF264 1 99.0 Highly correlated
63 ZNF202 1 160.0 Weakly correlated
64 ZNF169 1 94.0 Moderately correlated
65 ZNF140 1 99.0 Highly correlated
66 ZNF135 1 94.0 Moderately correlated
67 ZNF100 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF211 84 94.0 Moderately correlated
2 ZNF735 12 28.9 Weakly correlated
3 ZNF766 8 43.0 Weakly correlated
4 ZNF263 6 180.0 Weakly correlated
5 ZIM3 5 87.0 Moderately correlated
6 ZNF175 5 94.0 Moderately correlated
7 ZNF589 5 28.9 Weakly correlated
8 ZNF197 4 99.0 Highly correlated
9 ZNF680 4 28.9 Weakly correlated
10 ZNF584 3 99.0 Highly correlated
11 ZNF485 3 94.0 Moderately correlated
12 ZNF534 2 19.6 Weakly correlated
13 ZNF479 2 6.4 Weakly correlated
14 ZNF382 2 99.0 Highly correlated
15 ZNF75D 2 94.0 Moderately correlated
16 ZNF18 2 160.0 Weakly correlated
17 ZNF317 2 99.0 Highly correlated
18 ZNF528 1 43.0 Weakly correlated
19 ZNF248 1 99.0 Highly correlated
20 ZNF264 1 99.0 Highly correlated
21 ZNF723 1 15.2 Weakly correlated
22 ZNF274 1 99.0 Highly correlated
23 ZNF705B 1 28.9 Weakly correlated
24 ZNF677 1 99.0 Highly correlated
25 ZNF597 1 94.0 Moderately correlated
26 ZNF793 1 99.0 Highly correlated
27 ZNF468 1 28.9 Weakly correlated
28 ZNF707 1 74.0 Weakly correlated
29 ZNF506 1 28.9 Weakly correlated
30 ZNF101 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF211 94.0 Moderately correlated
2 ZNF766 43.0 Weakly correlated