ZRdb KZFP & Repeats
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LTR_MER34

  • Name
    MER34
  • Repbase
    MER34
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000770
Description :

MER34 is an LTR of a MER4-int group endogenous retrovirus. This has 4bp TSDs, and shares similarities to MER39, LTR29, LTR48 and LTR49.Initially reported in the opposite orientation. Note that MER standsfor MEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaggagttcagaacatgccaccccaaaatatgccactttggcatattgantattttgagctaaaggcacttgaaaaacagcaggtgcaagaaggtcactctgaccttcctcttttcttcctaaaagcaggagatgaaattcccatgtgaaagatgccctccctataccagaaggaaagnaacattcttatcatcaaggacgggaagtcgaggccgagagaaatctgtacaaacagaccttgttaaantaacccttatcttcctagtcacttctccacccaattaactaccctagcccaagcccctttgccttgtcacattttcacaatttactactctttgtccaacccagtatataagcgttcgactctaactgcttctttgggtcttcatttccttatgagggctcccgtgtcacgtaaaacttgtattaaataaatttgtatgcttttctcctgttaatctgtcttatgtcaatttaattctcaggcccagccggaaaaccctaagagggtagaggtaaaattttgcctcccctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 36 43.0 Weakly correlated
2 ZNF589 21 28.9 Weakly correlated
3 ZNF382 21 99.0 Weakly correlated
4 ZIM3 19 87.0 Highly correlated
5 ZKSCAN8 17 160.0 Weakly correlated
6 ZNF175 16 94.0 Weakly correlated
7 ZNF101 13 43.0 Weakly correlated
8 ZNF584 11 99.0 Weakly correlated
9 ZNF197 11 99.0 Weakly correlated
10 ZNF394 10 99.0 Weakly correlated
11 ZNF263 10 180.0 Weakly correlated
12 ZNF679 9 28.9 Weakly correlated
13 ZNF680 8 28.9 Weakly correlated
14 ZNF251 8 94.0 Weakly correlated
15 ZFP37 6 99.0 Weakly correlated
16 ZNF735 6 28.9 Weakly correlated
17 ZNF317 6 99.0 Weakly correlated
18 ZKSCAN1 6 160.0 Weakly correlated
19 ZNF18 5 160.0 Weakly correlated
20 ZNF534 4 19.6 Weakly correlated
21 ZNF485 4 94.0 Weakly correlated
22 ZNF705D 4 28.9 Weakly correlated
23 ZNF723 4 15.2 Weakly correlated
24 ZNF425 4 94.0 Weakly correlated
25 ZNF75D 4 94.0 Weakly correlated
26 ZNF610 3 28.9 Weakly correlated
27 ZNF528 3 43.0 Weakly correlated
28 ZNF506 3 28.9 Weakly correlated
29 ZNF479 3 6.4 Weakly correlated
30 ZNF324 3 99.0 Weakly correlated
31 ZNF320 3 28.9 Weakly correlated
32 ZNF2 3 99.0 Weakly correlated
33 ZNF274 3 99.0 Weakly correlated
34 ZNF331 2 94.0 Weakly correlated
35 ZFP57 2 87.0 Highly correlated
36 ZNF28 2 28.9 Weakly correlated
37 ZNF284 2 43.0 Weakly correlated
38 ZNF705B 2 28.9 Weakly correlated
39 ZNF793 2 99.0 Weakly correlated
40 ZFP69B 2 99.0 Weakly correlated
41 ZNF140 2 99.0 Weakly correlated
42 ZNF558 2 99.0 Weakly correlated
43 ZNF92 1 28.9 Weakly correlated
44 ZNF677 1 99.0 Weakly correlated
45 ZNF230 1 28.9 Weakly correlated
46 ZNF682 1 28.9 Weakly correlated
47 ZNF823 1 43.0 Weakly correlated
48 ZNF81 1 99.0 Weakly correlated
49 ZNF701 1 28.9 Weakly correlated
50 ZFP14 1 99.0 Weakly correlated
51 ZNF778 1 74.0 Moderately correlated
52 ZNF607 1 43.0 Weakly correlated
53 ZNF133 1 99.0 Weakly correlated
54 ZNF585A 1 99.0 Weakly correlated
55 ZNF554 1 99.0 Weakly correlated
56 ZNF510 1 99.0 Weakly correlated
57 ZNF490 1 43.0 Weakly correlated
58 ZNF441 1 43.0 Weakly correlated
59 ZNF440 1 28.9 Weakly correlated
60 ZNF169 1 94.0 Weakly correlated
61 ZNF189 1 99.0 Weakly correlated
62 ZNF347 1 43.0 Weakly correlated
63 ZNF334 1 99.0 Weakly correlated
64 ZNF273 1 28.9 Weakly correlated
65 ZNF264 1 99.0 Weakly correlated
66 ZNF211 1 94.0 Weakly correlated
67 ZNF257 1 0.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 9 87.0 Highly correlated
2 ZNF101 8 43.0 Weakly correlated
3 ZNF589 7 28.9 Weakly correlated
4 ZNF197 5 99.0 Weakly correlated
5 ZNF735 5 28.9 Weakly correlated
6 ZNF584 5 99.0 Weakly correlated
7 ZNF175 4 94.0 Weakly correlated
8 ZNF723 3 15.2 Weakly correlated
9 ZNF506 3 28.9 Weakly correlated
10 ZNF766 3 43.0 Weakly correlated
11 ZNF75D 2 94.0 Weakly correlated
12 ZNF485 2 94.0 Weakly correlated
13 ZKSCAN8 2 160.0 Weakly correlated
14 ZNF793 1 99.0 Weakly correlated
15 ZNF490 1 43.0 Weakly correlated
16 ZNF28 1 28.9 Weakly correlated
17 ZNF528 1 43.0 Weakly correlated
18 ZFP14 1 99.0 Weakly correlated
19 ZNF440 1 28.9 Weakly correlated
20 ZNF257 1 0.0 Weakly correlated
21 ZNF382 1 99.0 Weakly correlated
22 ZNF479 1 6.4 Weakly correlated
23 ZNF425 1 94.0 Weakly correlated
24 ZNF394 1 99.0 Weakly correlated
25 ZNF347 1 43.0 Weakly correlated
26 ZNF324 1 99.0 Weakly correlated
27 ZNF211 1 94.0 Weakly correlated
28 ZNF274 1 99.0 Weakly correlated
29 ZNF189 1 99.0 Weakly correlated
30 ZNF251 1 94.0 Weakly correlated
31 ZNF140 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF589 28.9 Weakly correlated