ZRdb KZFP & Repeats
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LTR_MER34-INT

  • Name
    MER34-INT
  • Repbase
    MER34-int
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000757
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gttctggcgatgaggacgggatatcactggctgggacaccctgctcgctccggaagctgcagntgagatcccgggaccnctgacaaaagccggcaaagggtaagaatttcttaccangtcagnctcccggatctctgcctgtggnatccggtcgagcgaagatggtaagagaatctcttgtctttttccctttccaaatttangattagcgggagaaaacatttgtgtgaactagttctttgggtatagcgactctggtgttttntttgagtatgaatattcatattgtttgatccttttcctcccagaaatggtctttgtcgttgttttcccnttntctttgtctttctgtgtcgtttgtcataaagaggggnaccatagggtagaacacgggcntaggccctataagcccgttgttcgagccggccccgcagactggtnagtttgcggttctnatcagaccggcgtctgtttagacaaactttgctgtgggtccccgaaataaaaaccggatgaggttctcctttcgtcttgttttatgtnccttgagagcttggctttgtgaccaagtgagaacactctctctggtctctgccatccggggggcgcgagtttcgggcccgcgtcaggcggccagtctgaaaaggctgggaacccgagacacgtaagattttaagcagcacnctctttgtccgaacgtgccaagctctcaggggaggttccagtccataaggggcctttgtcgtctcaaccttttgttgcctggttagtgctgggaaagtccnatcccagnagcgcctgcccggtgtcacagattagcgggtctgtgactggaggcgccccacattttgtggganaccggagacaccgtttgcacaaacacttcttaccgcctgtggcaacgaaggtctttgctttcttagnctatctctgggagtgaatttttggatcatgggggctgcatcttctgcgcccnctccgggaacgcctcttgcgtccatggtaaagacttattctaagcctggaaagttacctcctggnctttccatgaaaaggcttattggattgagtcgctattggaataagtacaccattggagatcctaatcgtcaatggccagangacggatcctttgaattagaaagacttttatatttgaaaaaaattttagagagctctcatcctaaacaactgccttattgtacctatgggaagatcaaattgaaagaaggacacanaanagtgtcacggctagccttagaaactcccttaacaaaattaaagagcagaaatcagacctagaacaaaagttaaaatccgcncccactataaatccccttccccaccacttataccctnctttacccccaactccctgtccctgaccctccagaagatcttttggatctctgggcccctggcttaaacccccctcctcaaaatccggccccatctcctcagcaaattcctttaatanctcctaaaactnttccacccccaactccccagaaaatcccttaaacacccagctgcctgctttaacttccctttccctgcaagatttacagaaagcactccggcctgatctcnaggcccggggcatacaggtcacttgtgtaaangctgacagccaggaaataaacctggcacaggctccagggacacgcagcnaggctcgctttgctgtgccttacgactcctcctacttcccggggctctgtaatcagactccatcagctccaggccttcctacgcaatgccctctgcgaatgtatcctggacccccnccgcaaagaattcacgtcccctggacagcagcagatcttttaaattacaaagcccttttgcccccactttcagaagatcctaccaagtttagagaggagttagagaggttagtggccattcacaatcccactcacagggacctcgactggctactaagaggtgtncttcccacccatgatnatactgtagttattagacaggccagacggcctccaggggaaaaccctctccacagagggaacaggtggccggaacctctcccnggccctcctgcaaatgaccaggaaatggctcagctagaggctgatattcagggcctgataggggcgatattagaggccttccctcctaaggtgaattggtctaaggttgaactatgtactcagaaggaaggagaacaccccaaggcttttgtngaatgntttatacaaacttttcaaaggcacactgcattaaatccngaagccccagaacatagaaatcttttaatttccgccctggttggaaatctnctccctgatataaagaggcaaatccaaaatagtgtagttggctgggcnggtcagtctctnagcgttattatggaagcagctacncaattctttgaaaatagcttgcaggaaaacaagaggaaaaagaattaaaatcaacagtccttgccttgcaaattgagtctttacaaaaacaaagncatgnctctaagagtaactcaaagcccnctcatntttctngccaaccacagagccttcctgttcgtctccagatgtttgcagatactgtaaaaagccaggacattggaaaaacaactgtcctgcacttaaaagaaaggaaaacttaaaaaatctccctagancccagcaccctcagaaggctcatttttccccttctgtgggacaataccccattgattgacggggtcagccgatcctcagtcgcaccccagagcccaccattaaacttaaagtagaggatcgggaactggatttctnaattgacactggtgcgactttctctaccattcgctcagagganttatctctacctgtcacctctgattctattcaagctgtcggagtctctgggcaacctatttcatcgcccatatctcaggccaccccaatatccttaggccctcttaacacccaccatgcctttctagtttctgactcctcaccagcaaaccttttaggtagagatttgttatgtaaatttaatgccaccatacaatgtaatgagaaaggcgtttttatttccctgccctcagaccaaacctcaaacttcctactttccctaatggagacccatctcgatttaaantcctctgaagaggatgcaatcttaaaagatgtcccagctagtctctgggcctcgcatgcaaatgaggttggattgctactgagtgcagagcctgtgcacattgcctggaaaaggaacaaacctttcccgtcagtagcccagtaccccctctcncgagatgcagagcgaggaatcgaacctataatagactcccttttacagcagggcgttcttatctttactncctcaccctgtaacaccccaatcttaccagtaaagaaggaaggaaaatttgattcagatgggaatcaaatctatcgatttgtacaagatctaagagccgtaaaccctttgtaattcctcgccaccccgtagtccctaatccagctactattcttacctcaattcctgctgatgcagcctggtttacagtaattgacctctgctcagctttcttttcgattccgttgcaccctgactcgnaatttctctttgcatttacatttagagggagacaattaacatggactcgcatacntcagggatattgtgagtccccctcaatattttcccaagtccttaaagccgacttagactctgtagcctttacccaaggctccactcttgttcaatatgttgatgaccttttactttgtaaccaaactaaacagggtgctcttatagactccctcattctcctaaaggcactagctgaacgaggccataaagcctccagatctaaacttcagtgggtgcaaacaactgttacctacttaggacatgaaatatctcagggcactcaaaagctcaccccaaaatgccttgagtcaattttgtccatccctctccccaaacnaaaaagcagctacgtaaatttctaggggcagctggctattgccaccaatggattcctaattttgctgccnttgccaaaccnctatatgccctcctcccagatgccactccagagcccattctctggccctcagaggcattaacctcctttgaagccttaaaattagcattgccctaccccccgctcttggcttacctaattttgacaaaccttttcacctatattgccatgaaaataatgggattgctgcaggtattctaggacaaccttttgcctctcagatacgtcctgtagcatatttctcatgccaatcggaccctgtggcagcaggcatgcccccatgcctgcgtgcggtagcngcagctgccgccctaattgacaaagccagcactcttacattaggctcccccattcacctctatgttccccatgctgtgtctgctctcttacaagttcataagacacagcacctctctacacgacgacagaccacctatgaacaggccctattaaccaatccctccatcatcttacgtcgttgtaacactttaaatccggctactctnctacccctccctgatgatggagagcctcactccattccacatgattgccttgcagctatagaaatggtttcaaagccacgagaggatctctcagacactcctttagacaacccagacttacttctattttgtgatggctcttgtaaatgaaatttccagggaaacataataactggctacgccatagtttccccacatgaaacgcttgaggcatactctttgcccactgtaaagtcagcccaagctgctgaactcatagctcttactagagcttgcacattggcaaaaggaaaaactgccactatttacactgactccagatatgcttttggagtctgtcatgctgttggcacaatctggaaatcccgcggattcttaacctctgctggtactcctattgccaatgggcatataattgctgccctattacaggctattcacctccctactaaaattgctattgttcattgtccagcccacactaaggagactgatactgtatctctagggaatgatagggcngacaaggctgctaaatacgcagccaaaaacggcccccctatcctttttccacccaatttataaacctgcctttatccctgactgatattattgattatcaggcaaatgccccacaatntgaaaaagataaatggatacaaaagggtgccaaacaattatcagacggattgtacattgggccaaacggacttcctgtggccccttttcttttaaccttttggcttgcacttatctcccatcagatgggacatatgtgcagatgggggatagttaaggaactaaaagacaattggttctgccctggcatccacaaaatttctgaccaaattatttcccagtgcactacttgtaaatctcaccaaatttctggaggaaaccaacattcctcagggagtcctccaaggcccacgctgccccttgcagcactccagatggattttatagatttacctccagctttaggctnttctcactgtttggttattgtctgcatgtttagtggatggactgaatgctatccgactagacgtgctgatgccacgacagtggtaaagaaattaataactgagattattcctcgttttggcattcctttatggattgaatcagaccaaggaactcattttacagcagaaataaaccacttgcttgcaaaaactctggggtactcattaaaatttcataccccataccatccccaatcctcagggcaagtggaacgtaaaaatctagacataaaanggactttgggaaaagtctgtcaaganactggacttaaatggccagaagcattacccctggcccttataaaaatctggaatactccaaataggagacatggattaaccccttttgaaatagtgtttggtcgctctatgcctactggcatctctaaaccttccattcctgggttgaatgaacactatggggacttaagtgaacaattcgatgctatgactagctatatacaggaactactagtatacttggagcatatcatcacaggtaaaaagggcgtggcctccgccaactgacaagccttgccatccttttcgaccaggagatcgcgtgtacatnaaggtttttagaagaaagcacgcgctgtcacctcgctgggaaggnccttgtgaagtactgctgaccacctacgctgccatcaaataaaagaaaaatcctcctggattcatgcaagccacgccaagctagacccagatcancactcccaggacaattggaagaccatccctacaggtgacctnaaantaaggatttccagggccaanccccaggccccagaagcagacggcatcacgaagtagacagcttttcccaagatcacggatcaagaaacttcacttccacctattttctcccccttttaggtctctctacctctnncctgaaaaaaaaaaagaacctctttcttttaatnaacaaaccttcctccctntttgtggtcgcctattgaaaaagctgactggagattgttgtctcaatctatcctattctccctctgatcctccactatgggctttctttcaaactgtgtcttgctcttattaacccttactgttttctcaacaggtcgggcacagacctgacacccccttgcaccagtcttccaaaccctggccacgttaactaatcaatctgattgctggttatgtcaacatctagatnatgcaaaagaacctgaacttatttttgttcctgccaatgcgagcgcctggtggatcaagtccggaagatggacgtatgacaaggtatggcatccacgancaagaaaacaacgtcacgctacttctccttttggtgagtcaattggacacagaaaaacctctatggaagctcgaggactgtcctttgctcaggtaaagtcattagaaaggaatttttccctttgcattgaaaacagaaatggtgctggacccttcctaggtgacataccaaggcgatattgcaatcaaaccctgtggtttgattccacagatggcatcctcaagcctctcacgaaggtcataaacggtcctggcactgactcttatgatacaaacatttgccaaatcaccggatgttacggntggctcacaagccagccctgcgcaacctggggtagctcagctgctcccctnattaggctgccagacaccaaagattacatatggatagaccaaaantctggactaacttggccaggtgacaaaaccaagccttatagctgccaaaaccaaactgnaggcctcctatatcagatatttcgcaacccgttctgctcctacggactgacagggacacatggaagatggagatgcgcagatgccaatatgacggangacaaggcacaacaaaccccaacctggngggtcacaggttccactctgaccttgtccgtgaacaacactggtctttttatcttgtgtggcgacaaggtatataaagggttcccacctagatggtcagggcgatgtggactcggatacctgacaccttccgtcaccaggtactccaccttaaatgccagccaaattacaaacttgggctccttcgttcataaagtagtgccacacaaacgtactagatgagacatcatagaaaacccacttgtatatcacaactctaagttcttttcagtgctgagancctttttcccaggcgtttggaacttatgagntggaaagggcaattctaaatntttccatagtaatagaacaagagttcagtatcactatgcaagcactgggagcactccaatcagaagtnaacagtttagcctctgctgtactccaaaatcgccgcgccctggatacactgacagcccaacaaggaggagcttgtgcgatcattggtgaagaacgctgcttctatgtaaatcactcgggacaaatagtgtctaatctgcaccttttaaaagacaagataaacactctccatcagataaatgaggctcaaccgtttnattggactgacctattcccaggaatgggagactggtttaatgggatatggggaaatgtgcttagatttgttcttttctgcttattcattctcgttctaatctatgttcttctctccctttgcagatcctttgccactcagctactaactcgatttttctctccacagccaccaactcagcttttagtgtgtgaaacttctagggaagtttcagacaggggaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 21 99.0 Highly correlated
2 ZNF766 14 43.0 Weakly correlated
3 ZNF263 11 180.0 Weakly correlated
4 ZNF680 7 28.9 Weakly correlated
5 ZNF589 6 28.9 Weakly correlated
6 ZNF607 6 43.0 Weakly correlated
7 ZNF317 6 99.0 Highly correlated
8 ZNF175 6 94.0 Moderately correlated
9 ZNF394 5 99.0 Highly correlated
10 ZFP37 4 99.0 Highly correlated
11 ZNF584 4 99.0 Highly correlated
12 ZNF723 4 15.2 Weakly correlated
13 ZNF101 4 43.0 Weakly correlated
14 ZNF705B 3 28.9 Weakly correlated
15 ZNF133 3 99.0 Highly correlated
16 ZNF28 3 28.9 Weakly correlated
17 ZKSCAN8 3 160.0 Weakly correlated
18 ZFP69B 3 99.0 Highly correlated
19 ZFP57 2 87.0 Moderately correlated
20 ZNF554 2 99.0 Highly correlated
21 ZNF701 2 28.9 Weakly correlated
22 ZNF793 2 99.0 Highly correlated
23 ZNF479 2 6.4 Weakly correlated
24 ZNF429 2 28.9 Weakly correlated
25 ZNF350 2 99.0 Highly correlated
26 ZNF257 2 0.0 Weakly correlated
27 ZNF197 2 99.0 Highly correlated
28 ZIM3 2 87.0 Moderately correlated
29 ZNF506 1 28.9 Weakly correlated
30 ZNF534 1 19.6 Weakly correlated
31 ZNF558 1 99.0 Highly correlated
32 ZNF417 1 28.9 Weakly correlated
33 ZNF641 1 99.0 Highly correlated
34 ZNF274 1 99.0 Highly correlated
35 ZNF18 1 160.0 Weakly correlated
36 ZNF141 1 43.0 Weakly correlated
37 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 4 15.2 Weakly correlated
2 ZNF263 3 180.0 Weakly correlated
3 ZNF680 3 28.9 Weakly correlated
4 ZNF28 2 28.9 Weakly correlated
5 ZNF133 2 99.0 Highly correlated
6 ZNF429 1 28.9 Weakly correlated
7 ZFP57 1 87.0 Moderately correlated
8 ZNF589 1 28.9 Weakly correlated
9 ZNF506 1 28.9 Weakly correlated
10 ZNF558 1 99.0 Highly correlated
11 ZNF350 1 99.0 Highly correlated
12 ZNF766 1 43.0 Weakly correlated
13 ZNF257 1 0.0 Weakly correlated
14 ZNF701 1 28.9 Weakly correlated
15 ZNF382 1 99.0 Highly correlated
16 ZNF175 1 94.0 Moderately correlated
17 ZNF101 1 43.0 Weakly correlated
18 ZIM3 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats