ZRdb KZFP & Repeats
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LTR_MER31B

  • Name
    MER31B
  • Repbase
    MER31B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000747
Description :

Has 4 bp TSDs. Fragments are similar to MER67A & D. Note that MER standsfor MEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgacaaagactctctccttgaccaaactttagtcaggctcctctgagccctcttctcgactaggcctcgaccttgggccctgtccttggcctgcntagcccagttttagcaagaatcctgctaagtcagtttagcgagaatcccccaccctcgatatctgatcaaattcctcatcccccaccatcccccanntgatatctgatcaccctggcctgccttcagcaagaatcctgttaggtcggtttagcaagaatccccctacccttgatgtctcctcttagtaattttccatccactgacccctcaccctgctccttggctataaatccccacttgtccttgctgtattcggagttgagcccaatctctctcccctattgcaatagtctttacncctattgcaatagtcctgaataaagtcttccttaccgttttaacaagtgtcagaataattttttctttaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 90 28.9 Weakly correlated
2 ZNF169 86 94.0 Moderately correlated
3 ZNF382 46 99.0 Highly correlated
4 ZNF263 37 180.0 Weakly correlated
5 ZNF766 35 43.0 Weakly correlated
6 ZNF534 27 19.6 Weakly correlated
7 ZIM3 21 87.0 Moderately correlated
8 ZNF701 19 28.9 Weakly correlated
9 ZFP37 14 99.0 Highly correlated
10 ZNF324 14 99.0 Highly correlated
11 ZNF679 13 28.9 Weakly correlated
12 ZNF394 13 99.0 Highly correlated
13 ZNF589 12 28.9 Weakly correlated
14 ZNF707 12 74.0 Weakly correlated
15 ZNF610 11 28.9 Weakly correlated
16 ZNF2 11 99.0 Highly correlated
17 ZNF479 10 6.4 Weakly correlated
18 ZFP69B 9 99.0 Highly correlated
19 ZNF101 9 43.0 Weakly correlated
20 ZNF175 9 94.0 Moderately correlated
21 ZNF558 7 99.0 Highly correlated
22 ZNF251 6 94.0 Moderately correlated
23 ZNF317 6 99.0 Highly correlated
24 ZNF705D 6 28.9 Weakly correlated
25 ZNF18 6 160.0 Weakly correlated
26 ZNF75D 5 94.0 Moderately correlated
27 ZNF471 5 94.0 Moderately correlated
28 ZNF257 5 0.0 Weakly correlated
29 ZNF197 5 99.0 Highly correlated
30 ZKSCAN1 4 160.0 Weakly correlated
31 ZNF584 4 99.0 Highly correlated
32 ZNF92 4 28.9 Weakly correlated
33 ZKSCAN8 4 160.0 Weakly correlated
34 ZNF793 4 99.0 Highly correlated
35 ZNF140 4 99.0 Highly correlated
36 ZNF554 3 99.0 Highly correlated
37 ZNF549 3 87.0 Moderately correlated
38 ZNF695 3 28.9 Weakly correlated
39 ZNF506 3 28.9 Weakly correlated
40 ZNF705B 3 28.9 Weakly correlated
41 ZFP57 3 87.0 Moderately correlated
42 ZNF485 3 94.0 Moderately correlated
43 ZNF133 3 99.0 Highly correlated
44 ZNF320 3 28.9 Weakly correlated
45 ZNF486 2 8.6 Weakly correlated
46 ZKSCAN5 2 160.0 Weakly correlated
47 ZNF723 2 15.2 Weakly correlated
48 ZNF274 2 99.0 Highly correlated
49 ZNF682 2 28.9 Weakly correlated
50 ZNF597 2 94.0 Moderately correlated
51 ZNF425 2 94.0 Moderately correlated
52 ZNF468 2 28.9 Weakly correlated
53 ZNF44 2 43.0 Weakly correlated
54 ZNF510 2 99.0 Highly correlated
55 ZNF528 2 43.0 Weakly correlated
56 ZNF28 1 28.9 Weakly correlated
57 ZNF490 1 43.0 Weakly correlated
58 ZNF879 1 99.0 Highly correlated
59 ZNF84 1 99.0 Highly correlated
60 ZNF823 1 43.0 Weakly correlated
61 ZNF780A 1 43.0 Weakly correlated
62 ZNF17 1 69.0 Weakly correlated
63 ZNF189 1 99.0 Highly correlated
64 ZNF736 1 43.0 Weakly correlated
65 ZNF282 1 319.0 Weakly correlated
66 ZNF433 1 43.0 Weakly correlated
67 ZNF460 1 74.0 Weakly correlated
68 ZNF700 1 28.9 Weakly correlated
69 ZNF331 1 94.0 Moderately correlated
70 ZNF333 1 99.0 Highly correlated
71 ZNF347 1 43.0 Weakly correlated
72 ZNF677 1 99.0 Highly correlated
73 ZNF641 1 99.0 Highly correlated
74 ZNF418 1 43.0 Weakly correlated
75 ZNF605 1 99.0 Highly correlated
76 ZNF441 1 43.0 Weakly correlated
77 ZNF440 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 36 28.9 Weakly correlated
2 ZNF534 17 19.6 Weakly correlated
3 ZIM3 14 87.0 Moderately correlated
4 ZNF263 11 180.0 Weakly correlated
5 ZNF479 8 6.4 Weakly correlated
6 ZNF707 5 74.0 Weakly correlated
7 ZNF766 4 43.0 Weakly correlated
8 ZNF75D 3 94.0 Moderately correlated
9 ZNF257 3 0.0 Weakly correlated
10 ZNF320 3 28.9 Weakly correlated
11 ZNF701 3 28.9 Weakly correlated
12 ZNF471 3 94.0 Moderately correlated
13 ZNF485 2 94.0 Moderately correlated
14 ZNF251 2 94.0 Moderately correlated
15 ZKSCAN5 2 160.0 Weakly correlated
16 ZNF133 2 99.0 Highly correlated
17 ZNF695 1 28.9 Weakly correlated
18 ZNF584 1 99.0 Highly correlated
19 ZNF44 1 43.0 Weakly correlated
20 ZNF605 1 99.0 Highly correlated
21 ZNF468 1 28.9 Weakly correlated
22 ZNF347 1 43.0 Weakly correlated
23 ZNF723 1 15.2 Weakly correlated
24 ZNF682 1 28.9 Weakly correlated
25 ZNF679 1 28.9 Weakly correlated
26 ZNF382 1 99.0 Highly correlated
27 ZNF677 1 99.0 Highly correlated
28 ZNF793 1 99.0 Highly correlated
29 ZNF610 1 28.9 Weakly correlated
30 ZNF17 1 69.0 Weakly correlated
31 ZNF317 1 99.0 Highly correlated
32 ZFP57 1 87.0 Moderately correlated
33 ZNF169 1 94.0 Moderately correlated
34 ZNF189 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF534 19.6 Weakly correlated