ZRdb KZFP & Repeats
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LTR_MER31A

  • Name
    MER31A
  • Repbase
    MER31A
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000746
Description :

Has 4 bp TSDs. Fragments are similar to MER67A & D. Note that MER standsfor MEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgacaaagattctttgcttggccaaactttagtcaggctcctgaaccttctcctaggcccatctgtgcacttccttgtaaaatccagttttagcaaagaaccctgctaagtcagtttagcaagaaccccccaccctcgatatctgatcaccctcgatatctgatcaggttcctcatcctccaccatcccccaggtgatgtctgatcaccctggcctgtcttcagcaagaatcctgttaggtcggtttagccagaatcccccttacccctgatgtttcctcttagtaattttccatccactgacccccaccctgctccttggctataaattcccacttgcccatgctgtattcggagttgagcccaatctctctcccccactgcaagaccccattgcagtggtccctatacctatcgcgatggtcctgaataaagtcttccttaccgtgctttaacaagtgtcattgaataattttttctttaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 37 99.0 Weakly correlated
2 ZNF680 28 28.9 Weakly correlated
3 ZNF766 20 43.0 Weakly correlated
4 ZNF534 19 19.6 Weakly correlated
5 ZNF701 16 28.9 Weakly correlated
6 ZIM3 14 87.0 Highly correlated
7 ZNF263 13 180.0 Weakly correlated
8 ZNF317 12 99.0 Weakly correlated
9 ZNF705B 11 28.9 Weakly correlated
10 ZNF394 10 99.0 Weakly correlated
11 ZNF679 10 28.9 Weakly correlated
12 ZNF101 9 43.0 Weakly correlated
13 ZNF75D 8 94.0 Weakly correlated
14 ZFP37 8 99.0 Weakly correlated
15 ZNF18 5 160.0 Weakly correlated
16 ZNF549 5 87.0 Highly correlated
17 ZNF175 5 94.0 Weakly correlated
18 ZNF441 4 43.0 Weakly correlated
19 ZFP69B 4 99.0 Weakly correlated
20 ZKSCAN1 4 160.0 Weakly correlated
21 ZNF320 4 28.9 Weakly correlated
22 ZNF2 4 99.0 Weakly correlated
23 ZNF425 4 94.0 Weakly correlated
24 ZNF486 4 8.6 Weakly correlated
25 ZNF92 4 28.9 Weakly correlated
26 ZNF251 4 94.0 Weakly correlated
27 ZNF705D 4 28.9 Weakly correlated
28 ZNF707 4 74.0 Moderately correlated
29 ZNF584 4 99.0 Weakly correlated
30 ZNF597 3 94.0 Weakly correlated
31 ZNF264 3 99.0 Weakly correlated
32 ZNF682 3 28.9 Weakly correlated
33 ZNF197 3 99.0 Weakly correlated
34 ZKSCAN5 3 160.0 Weakly correlated
35 ZFP14 3 99.0 Weakly correlated
36 ZNF610 2 28.9 Weakly correlated
37 ZFP28 2 99.0 Weakly correlated
38 ZNF589 2 28.9 Weakly correlated
39 ZNF723 2 15.2 Weakly correlated
40 ZNF558 2 99.0 Weakly correlated
41 ZNF93 2 8.6 Weakly correlated
42 ZNF554 2 99.0 Weakly correlated
43 ZNF28 2 28.9 Weakly correlated
44 ZKSCAN8 2 160.0 Weakly correlated
45 ZNF180 2 99.0 Weakly correlated
46 ZNF182 2 99.0 Weakly correlated
47 ZNF257 2 0.0 Weakly correlated
48 ZNF274 2 99.0 Weakly correlated
49 ZNF471 2 94.0 Weakly correlated
50 ZNF479 2 6.4 Weakly correlated
51 ZNF568 1 99.0 Weakly correlated
52 ZNF510 1 99.0 Weakly correlated
53 ZNF140 1 99.0 Weakly correlated
54 ZNF160 1 74.0 Moderately correlated
55 ZNF765 1 8.6 Weakly correlated
56 ZNF17 1 69.0 Weakly correlated
57 ZNF75A 1 94.0 Weakly correlated
58 ZNF735 1 28.9 Weakly correlated
59 ZNF555 1 94.0 Weakly correlated
60 ZNF716 1 19.6 Weakly correlated
61 ZNF202 1 160.0 Weakly correlated
62 ZNF585B 1 99.0 Weakly correlated
63 ZNF700 1 28.9 Weakly correlated
64 ZNF528 1 43.0 Weakly correlated
65 ZNF324 1 99.0 Weakly correlated
66 ZNF34 1 99.0 Weakly correlated
67 ZNF671 1 94.0 Weakly correlated
68 ZNF41 1 99.0 Weakly correlated
69 ZNF605 1 99.0 Weakly correlated
70 ZNF44 1 43.0 Weakly correlated
71 ZNF468 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 11 19.6 Weakly correlated
2 ZNF680 11 28.9 Weakly correlated
3 ZIM3 6 87.0 Highly correlated
4 ZNF18 3 160.0 Weakly correlated
5 ZNF707 3 74.0 Moderately correlated
6 ZNF263 3 180.0 Weakly correlated
7 ZNF766 2 43.0 Weakly correlated
8 ZNF75D 2 94.0 Weakly correlated
9 ZKSCAN5 2 160.0 Weakly correlated
10 ZNF264 1 99.0 Weakly correlated
11 ZNF175 1 94.0 Weakly correlated
12 ZNF34 1 99.0 Weakly correlated
13 ZNF735 1 28.9 Weakly correlated
14 ZNF597 1 94.0 Weakly correlated
15 ZNF317 1 99.0 Weakly correlated
16 ZNF723 1 15.2 Weakly correlated
17 ZNF589 1 28.9 Weakly correlated
18 ZNF705D 1 28.9 Weakly correlated
19 ZNF705B 1 28.9 Weakly correlated
20 ZNF471 1 94.0 Weakly correlated
21 ZNF44 1 43.0 Weakly correlated
22 ZNF197 1 99.0 Weakly correlated
23 ZNF180 1 99.0 Weakly correlated
24 ZNF605 1 99.0 Weakly correlated
25 ZNF585B 1 99.0 Weakly correlated
26 ZNF479 1 6.4 Weakly correlated
27 ZNF468 1 28.9 Weakly correlated
28 ZFP14 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Highly correlated