ZRdb KZFP & Repeats
...

LTR_MER21C

  • Name
    MER21C
  • Repbase
    MER21C
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000740
Description :

MER21C may have evolved from MER21B by partial duplication of rougly the5' terminal 90bp. Has 5 bp TSDs. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatattgtgatataataagaaatatatatttggtctctgcccccggttcctggcacagagctcctaaaacccttgtaatttcctgagcgataggggtgctaggagcatcttttgttctaatatttggtctttgnccccggttcctgacacagagctcctaaaacccttggaatttcctgggtgataggagcgtcttttgttctaatgaggtgactcttggctgggggctcctggatagcctcaggatgggggctggtcgccagaggaaccaaccatgtgattagagggttggaactttcagccccacccccgacctccggggaggggagaggggctggagattgagttaatcaccaatggccaatgatttaatcaatcatgcctacgtaatgaagcctccataaaaaccctaaacgacggggttcggagagcttccgggttggtgaacacatngaggtgccgggagggtggcgcgcccggagagggcacggaagctccgcgccccttcccacataccttgccctatgcatctcttccatctggctgttcatctgtatcctttgtaatatcctttataataaaccggtaaacgtaagtaaagtgtttccctgagttctgtgagccgttctagcaaattatcgaacccgaggagggggtcgtgggaacccccgatttatagccggtcggtcagaagtacgggtnacaacctgggacttgcgactggcgtctgaagtgggggcagtcttgtgggactgagcccttaacctgtggggtctgacgctaactccaggtagntagtgtcagaattgaattgaattgtaggacacccagttggtgtccgctggagaattgnttggtgtgtgggaaaaaccccacacatttggtgtcagaagtgttgtgagagtagagaaaaacagtttgttttttcctacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 359 99.0 Highly correlated
2 ZNF766 103 43.0 Weakly correlated
3 ZNF263 83 180.0 Weakly correlated
4 ZNF394 64 99.0 Highly correlated
5 ZNF479 54 6.4 Weakly correlated
6 ZNF793 53 99.0 Highly correlated
7 ZNF92 40 28.9 Weakly correlated
8 ZNF75D 39 94.0 Moderately correlated
9 ZNF175 38 94.0 Moderately correlated
10 ZNF589 37 28.9 Weakly correlated
11 ZNF28 36 28.9 Weakly correlated
12 ZNF789 36 99.0 Highly correlated
13 ZFP37 34 99.0 Highly correlated
14 ZNF534 34 19.6 Weakly correlated
15 ZNF680 34 28.9 Weakly correlated
16 ZNF2 33 99.0 Highly correlated
17 ZNF257 32 0.0 Weakly correlated
18 ZNF317 32 99.0 Highly correlated
19 ZNF679 30 28.9 Weakly correlated
20 ZIM3 29 87.0 Moderately correlated
21 ZNF597 29 94.0 Moderately correlated
22 ZNF705B 29 28.9 Weakly correlated
23 ZNF554 26 99.0 Highly correlated
24 ZFP69B 25 99.0 Highly correlated
25 ZNF18 25 160.0 Weakly correlated
26 ZNF324 25 99.0 Highly correlated
27 ZNF584 24 99.0 Highly correlated
28 ZNF786 24 99.0 Highly correlated
29 ZKSCAN1 23 160.0 Weakly correlated
30 ZKSCAN8 23 160.0 Weakly correlated
31 ZNF101 23 43.0 Weakly correlated
32 ZNF610 23 28.9 Weakly correlated
33 ZNF506 21 28.9 Weakly correlated
34 ZNF197 20 99.0 Highly correlated
35 ZNF320 20 28.9 Weakly correlated
36 ZNF723 18 15.2 Weakly correlated
37 ZNF701 16 28.9 Weakly correlated
38 ZNF705D 16 28.9 Weakly correlated
39 ZNF141 11 43.0 Weakly correlated
40 ZNF251 11 94.0 Moderately correlated
41 ZNF558 11 99.0 Highly correlated
42 ZNF707 11 74.0 Weakly correlated
43 ZNF140 9 99.0 Highly correlated
44 ZNF350 8 99.0 Highly correlated
45 ZNF274 7 99.0 Highly correlated
46 ZNF549 7 87.0 Moderately correlated
47 ZNF823 7 43.0 Weakly correlated
48 ZFP28 6 99.0 Highly correlated
49 ZNF468 6 28.9 Weakly correlated
50 ZNF485 6 94.0 Moderately correlated
51 ZNF490 6 43.0 Weakly correlated
52 ZNF671 6 94.0 Moderately correlated
53 ZNF182 5 99.0 Highly correlated
54 ZNF284 5 43.0 Weakly correlated
55 ZNF354A 5 99.0 Highly correlated
56 ZNF547 5 74.0 Weakly correlated
57 ZNF695 5 28.9 Weakly correlated
58 ZNF778 5 74.0 Weakly correlated
59 ZFP57 4 87.0 Moderately correlated
60 ZNF133 4 99.0 Highly correlated
61 ZNF264 4 99.0 Highly correlated
62 ZNF273 4 28.9 Weakly correlated
63 ZNF418 4 43.0 Weakly correlated
64 ZNF429 4 28.9 Weakly correlated
65 ZNF445 4 99.0 Highly correlated
66 ZNF486 4 8.6 Weakly correlated
67 ZNF528 4 43.0 Weakly correlated
68 ZNF563 4 28.9 Weakly correlated
69 ZNF674 4 99.0 Highly correlated
70 ZNF677 4 99.0 Highly correlated
71 ZNF8 4 99.0 Highly correlated
72 ZNF347 3 43.0 Weakly correlated
73 ZNF441 3 43.0 Weakly correlated
74 ZNF519 3 19.6 Weakly correlated
75 ZNF530 3 28.9 Weakly correlated
76 ZNF585B 3 99.0 Highly correlated
77 ZNF792 3 94.0 Moderately correlated
78 ZFP69 2 99.0 Highly correlated
79 ZNF224 2 69.0 Weakly correlated
80 ZNF230 2 28.9 Weakly correlated
81 ZNF26 2 99.0 Highly correlated
82 ZNF331 2 94.0 Moderately correlated
83 ZNF343 2 74.0 Weakly correlated
84 ZNF573 2 94.0 Moderately correlated
85 ZNF611 2 19.6 Weakly correlated
86 ZNF66 2 0.0 Weakly correlated
87 ZNF716 2 19.6 Weakly correlated
88 ZNF735 2 28.9 Weakly correlated
89 ZNF799 2 43.0 Weakly correlated
90 ZNF808 2 19.6 Weakly correlated
91 ZNF816 2 28.9 Weakly correlated
92 ZNF84 2 99.0 Highly correlated
93 ZFP14 1 99.0 Highly correlated
94 ZKSCAN5 1 160.0 Weakly correlated
95 ZNF10 1 99.0 Highly correlated
96 ZNF124 1 43.0 Weakly correlated
97 ZNF17 1 69.0 Weakly correlated
98 ZNF215 1 99.0 Highly correlated
99 ZNF248 1 99.0 Highly correlated
100 ZNF282 1 319.0 Weakly correlated
101 ZNF287 1 99.0 Highly correlated
102 ZNF304 1 99.0 Highly correlated
103 ZNF334 1 99.0 Highly correlated
104 ZNF420 1 94.0 Moderately correlated
105 ZNF426 1 87.0 Moderately correlated
106 ZNF431 1 28.9 Weakly correlated
107 ZNF433 1 43.0 Weakly correlated
108 ZNF436 1 180.0 Weakly correlated
109 ZNF442 1 43.0 Weakly correlated
110 ZNF44 1 43.0 Weakly correlated
111 ZNF471 1 94.0 Moderately correlated
112 ZNF514 1 94.0 Moderately correlated
113 ZNF559 1 74.0 Weakly correlated
114 ZNF562 1 28.9 Weakly correlated
115 ZNF565 1 99.0 Highly correlated
116 ZNF567 1 99.0 Highly correlated
117 ZNF568 1 99.0 Highly correlated
118 ZNF569 1 99.0 Highly correlated
119 ZNF578 1 15.2 Weakly correlated
120 ZNF585A 1 99.0 Highly correlated
121 ZNF605 1 99.0 Highly correlated
122 ZNF641 1 99.0 Highly correlated
123 ZNF669 1 43.0 Weakly correlated
124 ZNF670 1 69.0 Weakly correlated
125 ZNF675 1 8.6 Weakly correlated
126 ZNF681 1 28.9 Weakly correlated
127 ZNF682 1 28.9 Weakly correlated
128 ZNF684 1 99.0 Highly correlated
129 ZNF700 1 28.9 Weakly correlated
130 ZNF730 1 19.6 Weakly correlated
131 ZNF736 1 43.0 Weakly correlated
132 ZNF777 1 319.0 Weakly correlated
133 ZNF77 1 87.0 Moderately correlated
134 ZNF780A 1 43.0 Weakly correlated
135 ZNF81 1 99.0 Highly correlated
136 ZNF878 1 43.0 Weakly correlated
137 ZNF879 1 99.0 Highly correlated
138 ZNF91 1 6.0 Weakly correlated
139 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 62 99.0 Highly correlated
2 ZNF793 31 99.0 Highly correlated
3 ZNF789 31 99.0 Highly correlated
4 ZNF479 26 6.4 Weakly correlated
5 ZNF263 22 180.0 Weakly correlated
6 ZNF75D 22 94.0 Moderately correlated
7 ZNF534 21 19.6 Weakly correlated
8 ZNF28 20 28.9 Weakly correlated
9 ZNF597 15 94.0 Moderately correlated
10 ZNF506 14 28.9 Weakly correlated
11 ZNF766 13 43.0 Weakly correlated
12 ZIM3 11 87.0 Moderately correlated
13 ZFP37 10 99.0 Highly correlated
14 ZNF141 9 43.0 Weakly correlated
15 ZNF320 8 28.9 Weakly correlated
16 ZNF257 8 0.0 Weakly correlated
17 ZNF554 8 99.0 Highly correlated
18 ZNF680 6 28.9 Weakly correlated
19 ZNF723 6 15.2 Weakly correlated
20 ZNF101 5 43.0 Weakly correlated
21 ZNF324 5 99.0 Highly correlated
22 ZNF468 5 28.9 Weakly correlated
23 ZNF701 5 28.9 Weakly correlated
24 ZNF677 3 99.0 Highly correlated
25 ZNF679 3 28.9 Weakly correlated
26 ZNF485 3 94.0 Moderately correlated
27 ZNF175 3 94.0 Moderately correlated
28 ZNF347 3 43.0 Weakly correlated
29 ZNF350 3 99.0 Highly correlated
30 ZNF589 2 28.9 Weakly correlated
31 ZNF197 2 99.0 Highly correlated
32 ZFP69B 2 99.0 Highly correlated
33 ZNF317 2 99.0 Highly correlated
34 ZKSCAN1 2 160.0 Weakly correlated
35 ZNF671 2 94.0 Moderately correlated
36 ZNF705D 2 28.9 Weakly correlated
37 ZNF707 2 74.0 Weakly correlated
38 ZNF133 2 99.0 Highly correlated
39 ZNF674 2 99.0 Highly correlated
40 ZFP57 2 87.0 Moderately correlated
41 ZNF18 2 160.0 Weakly correlated
42 ZNF2 2 99.0 Highly correlated
43 ZNF530 2 28.9 Weakly correlated
44 ZNF705B 2 28.9 Weakly correlated
45 ZNF735 2 28.9 Weakly correlated
46 ZNF816 1 28.9 Weakly correlated
47 ZFP14 1 99.0 Highly correlated
48 ZNF786 1 99.0 Highly correlated
49 ZNF558 1 99.0 Highly correlated
50 ZNF780A 1 43.0 Weakly correlated
51 ZNF610 1 28.9 Weakly correlated
52 ZNF92 1 28.9 Weakly correlated
53 ZNF282 1 319.0 Weakly correlated
54 ZNF716 1 19.6 Weakly correlated
55 ZNF471 1 94.0 Moderately correlated
56 ZKSCAN5 1 160.0 Weakly correlated
57 ZKSCAN8 1 160.0 Weakly correlated
58 ZNF10 1 99.0 Highly correlated
59 ZNF140 1 99.0 Highly correlated
60 ZNF343 1 74.0 Weakly correlated
61 ZNF490 1 43.0 Weakly correlated
62 ZNF567 1 99.0 Highly correlated
63 ZNF684 1 99.0 Highly correlated
64 ZNF695 1 28.9 Weakly correlated
65 ZNF823 1 43.0 Weakly correlated
66 ZNF486 1 8.6 Weakly correlated
67 ZNF584 1 99.0 Highly correlated
68 ZNF585B 1 99.0 Highly correlated
69 ZNF682 1 28.9 Weakly correlated
70 ZNF182 1 99.0 Highly correlated
71 ZNF585A 1 99.0 Highly correlated
72 ZNF273 1 28.9 Weakly correlated
73 ZNF429 1 28.9 Weakly correlated
74 ZNF441 1 43.0 Weakly correlated
75 ZNF549 1 87.0 Moderately correlated
76 ZFP69 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF320 28.9 Weakly correlated
3 ZNF597 94.0 Moderately correlated