ZRdb KZFP & Repeats
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LTR_MER21B

  • Name
    MER21B
  • Repbase
    MER21B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000741
Description :

MER21B is a member of a closely related group of LTRs including: MER34,MER39, LTR29, LTR48 and LTR49. Target site duplication is unclear --either 4 or 5 bp. Note that MER stands for MEdium Reiteration frequencyinterspersed repeat. As such, MERs as a group are a grab bag of DNAtransposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatattgtgaaatatatatttggtcttcgtccccgtttcctggcatacaactcctaaaatccttggaatctccaaagtgataagngtgtcttttgtatgctaatgagntgactggtggctggcggcccctaggtagcttcaggatgggggctggtcaccggaaagaccaaggcangattagagggttgggactttcagccccaccccccaacctccggggaggggagaggggctgaaggttaagttgatcaccaatggccaatgatttaatcaatcatgcctacgtaatgaagcctccataaaaacccaaaaggacngggttcggagagcttccggatagctgaacacgtggaggttcctggagggtggcgcgcccggggagggcatggaagctccgcgccccttcccccatacctcgccctatgcatctcttcnatctggntgttcatctgtatcctttgtaatatcctttataataaaccggtaaacgtaagtaangtgtttccctgagttctgtgagccgctctagcaaattaatcgaacccaaggagggggtcgtgggaaccccgatttatagccggtcggtcagaagcacaggtnacaacctggggcttgcgactggcgtctgaagtggggggcagtcttgtgggactgagccctcaacctgtgggatctgacgctatctccaggtagatagtgtcagaattgaattgaattagaggacacccagctggtgtccgctgcagaattgattgcttgcttggtgtgtggggaaaaaccccacacatttggtcacagaagtnttctgtgttgattgttgtggtgtgagagcagaggaaaaacantttgggntttttcctacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 106 99.0 Highly correlated
2 ZNF793 54 99.0 Highly correlated
3 ZNF766 43 43.0 Weakly correlated
4 ZNF175 33 94.0 Moderately correlated
5 ZNF589 33 28.9 Weakly correlated
6 ZNF263 32 180.0 Weakly correlated
7 ZNF75D 32 94.0 Moderately correlated
8 ZNF680 29 28.9 Weakly correlated
9 ZNF534 27 19.6 Weakly correlated
10 ZNF394 22 99.0 Highly correlated
11 ZNF479 21 6.4 Weakly correlated
12 ZNF584 21 99.0 Highly correlated
13 ZNF679 21 28.9 Weakly correlated
14 ZIM3 20 87.0 Moderately correlated
15 ZKSCAN8 20 160.0 Weakly correlated
16 ZFP37 18 99.0 Highly correlated
17 ZNF197 16 99.0 Highly correlated
18 ZNF141 15 43.0 Weakly correlated
19 ZNF251 14 94.0 Moderately correlated
20 ZNF723 14 15.2 Weakly correlated
21 ZNF789 14 99.0 Highly correlated
22 ZFP69B 13 99.0 Highly correlated
23 ZNF317 13 99.0 Highly correlated
24 ZNF506 13 28.9 Weakly correlated
25 ZNF320 12 28.9 Weakly correlated
26 ZNF597 12 94.0 Moderately correlated
27 ZKSCAN1 11 160.0 Weakly correlated
28 ZNF28 9 28.9 Weakly correlated
29 ZNF554 8 99.0 Highly correlated
30 ZNF624 8 99.0 Highly correlated
31 ZNF705B 8 28.9 Weakly correlated
32 ZNF705D 8 28.9 Weakly correlated
33 ZNF112 7 99.0 Highly correlated
34 ZNF18 7 160.0 Weakly correlated
35 ZNF2 7 99.0 Highly correlated
36 ZNF707 7 74.0 Weakly correlated
37 ZNF735 7 28.9 Weakly correlated
38 ZNF101 6 43.0 Weakly correlated
39 ZNF257 6 0.0 Weakly correlated
40 ZNF549 6 87.0 Moderately correlated
41 ZNF558 6 99.0 Highly correlated
42 ZNF599 6 99.0 Highly correlated
43 ZNF705A 6 28.9 Weakly correlated
44 ZNF14 5 69.0 Weakly correlated
45 ZNF160 5 74.0 Weakly correlated
46 ZNF20 5 43.0 Weakly correlated
47 ZNF468 5 28.9 Weakly correlated
48 ZNF485 5 94.0 Moderately correlated
49 ZNF510 5 99.0 Highly correlated
50 ZNF514 5 94.0 Moderately correlated
51 ZNF530 5 28.9 Weakly correlated
52 ZNF559 5 74.0 Weakly correlated
53 ZNF587B 5 8.6 Weakly correlated
54 ZNF701 5 28.9 Weakly correlated
55 ZNF718 5 19.6 Weakly correlated
56 ZNF732 5 28.9 Weakly correlated
57 ZNF852 5 94.0 Moderately correlated
58 ZNF878 5 43.0 Weakly correlated
59 ZNF8 5 99.0 Highly correlated
60 ZNF92 5 28.9 Weakly correlated
61 ZKSCAN4 4 99.0 Highly correlated
62 ZNF133 4 99.0 Highly correlated
63 ZNF177 4 94.0 Moderately correlated
64 ZNF182 4 99.0 Highly correlated
65 ZNF227 4 99.0 Highly correlated
66 ZNF268 4 94.0 Moderately correlated
67 ZNF324 4 99.0 Highly correlated
68 ZNF416 4 43.0 Weakly correlated
69 ZNF420 4 94.0 Moderately correlated
70 ZNF470 4 99.0 Highly correlated
71 ZNF471 4 94.0 Moderately correlated
72 ZNF486 4 8.6 Weakly correlated
73 ZNF500 4 160.0 Weakly correlated
74 ZNF528 4 43.0 Weakly correlated
75 ZNF544 4 0.0 Weakly correlated
76 ZNF556 4 94.0 Moderately correlated
77 ZNF560 4 43.0 Weakly correlated
78 ZNF568 4 99.0 Highly correlated
79 ZNF583 4 99.0 Highly correlated
80 ZNF585B 4 99.0 Highly correlated
81 ZNF689 4 99.0 Highly correlated
82 ZNF700 4 28.9 Weakly correlated
83 ZNF746 4 99.0 Highly correlated
84 ZNF763 4 15.2 Weakly correlated
85 ZNF772 4 94.0 Moderately correlated
86 ZNF778 4 74.0 Weakly correlated
87 ZNF813 4 28.9 Weakly correlated
88 ZNF814 4 0.0 Weakly correlated
89 ZFP30 3 99.0 Highly correlated
90 ZFP92 3 99.0 Highly correlated
91 ZNF215 3 99.0 Highly correlated
92 ZNF230 3 28.9 Weakly correlated
93 ZNF233 3 99.0 Highly correlated
94 ZNF234 3 99.0 Highly correlated
95 ZNF253 3 19.6 Weakly correlated
96 ZNF256 3 74.0 Weakly correlated
97 ZNF273 3 28.9 Weakly correlated
98 ZNF426 3 87.0 Moderately correlated
99 ZNF43 3 43.0 Weakly correlated
100 ZNF441 3 43.0 Weakly correlated
101 ZNF473 3 43.0 Weakly correlated
102 ZNF547 3 74.0 Weakly correlated
103 ZNF569 3 99.0 Highly correlated
104 ZNF578 3 15.2 Weakly correlated
105 ZNF607 3 43.0 Weakly correlated
106 ZNF665 3 28.9 Weakly correlated
107 ZNF66 3 0.0 Weakly correlated
108 ZNF688 3 160.0 Weakly correlated
109 ZNF705E 3 0.0 Weakly correlated
110 ZNF717 3 0.0 Weakly correlated
111 ZNF726 3 28.9 Weakly correlated
112 ZNF729 3 8.6 Weakly correlated
113 ZNF747 3 43.0 Weakly correlated
114 ZNF761 3 19.6 Weakly correlated
115 ZNF77 3 87.0 Moderately correlated
116 ZNF808 3 19.6 Weakly correlated
117 ZNF823 3 43.0 Weakly correlated
118 ZNF845 3 28.9 Weakly correlated
119 ZNF850 3 28.9 Weakly correlated
120 ZFP57 2 87.0 Moderately correlated
121 ZFP69 2 99.0 Highly correlated
122 ZKSCAN5 2 160.0 Weakly correlated
123 ZNF226 2 99.0 Highly correlated
124 ZNF274 2 99.0 Highly correlated
125 ZNF286A 2 160.0 Weakly correlated
126 ZNF334 2 99.0 Highly correlated
127 ZNF347 2 43.0 Weakly correlated
128 ZNF461 2 99.0 Highly correlated
129 ZNF519 2 19.6 Weakly correlated
130 ZNF551 2 94.0 Moderately correlated
131 ZNF610 2 28.9 Weakly correlated
132 ZNF611 2 19.6 Weakly correlated
133 ZNF630 2 94.0 Moderately correlated
134 ZNF674 2 99.0 Highly correlated
135 ZNF682 2 28.9 Weakly correlated
136 ZNF699 2 99.0 Highly correlated
137 ZNF709 2 87.0 Moderately correlated
138 ZNF713 2 94.0 Moderately correlated
139 ZNF727 2 19.6 Weakly correlated
140 ZNF773 2 94.0 Moderately correlated
141 ZNF829 2 99.0 Highly correlated
142 ZNF836 2 43.0 Weakly correlated
143 ZNF84 2 99.0 Highly correlated
144 ZFP28 1 99.0 Highly correlated
145 ZNF140 1 99.0 Highly correlated
146 ZNF169 1 94.0 Moderately correlated
147 ZNF189 1 99.0 Highly correlated
148 ZNF213 1 180.0 Weakly correlated
149 ZNF229 1 99.0 Highly correlated
150 ZNF267 1 43.0 Weakly correlated
151 ZNF26 1 99.0 Highly correlated
152 ZNF284 1 43.0 Weakly correlated
153 ZNF304 1 99.0 Highly correlated
154 ZNF343 1 74.0 Weakly correlated
155 ZNF350 1 99.0 Highly correlated
156 ZNF417 1 28.9 Weakly correlated
157 ZNF425 1 94.0 Moderately correlated
158 ZNF44 1 43.0 Weakly correlated
159 ZNF490 1 43.0 Weakly correlated
160 ZNF546 1 99.0 Highly correlated
161 ZNF585A 1 99.0 Highly correlated
162 ZNF586 1 43.0 Weakly correlated
163 ZNF605 1 99.0 Highly correlated
164 ZNF616 1 43.0 Weakly correlated
165 ZNF671 1 94.0 Moderately correlated
166 ZNF675 1 8.6 Weakly correlated
167 ZNF728 1 19.6 Weakly correlated
168 ZNF736 1 43.0 Weakly correlated
169 ZNF786 1 99.0 Highly correlated
170 ZNF792 1 94.0 Moderately correlated
171 ZNF85 1 28.9 Weakly correlated
172 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 33 99.0 Highly correlated
2 ZNF75D 17 94.0 Moderately correlated
3 ZNF382 13 99.0 Highly correlated
4 ZNF141 12 43.0 Weakly correlated
5 ZNF506 12 28.9 Weakly correlated
6 ZNF789 11 99.0 Highly correlated
7 ZNF534 10 19.6 Weakly correlated
8 ZNF597 9 94.0 Moderately correlated
9 ZNF680 8 28.9 Weakly correlated
10 ZIM3 8 87.0 Moderately correlated
11 ZNF479 6 6.4 Weakly correlated
12 ZNF530 5 28.9 Weakly correlated
13 ZNF28 5 28.9 Weakly correlated
14 ZNF263 5 180.0 Weakly correlated
15 ZNF766 4 43.0 Weakly correlated
16 ZFP37 3 99.0 Highly correlated
17 ZNF723 3 15.2 Weakly correlated
18 ZNF485 3 94.0 Moderately correlated
19 ZNF707 3 74.0 Weakly correlated
20 ZNF320 3 28.9 Weakly correlated
21 ZNF468 3 28.9 Weakly correlated
22 ZNF554 2 99.0 Highly correlated
23 ZNF257 2 0.0 Weakly correlated
24 ZNF852 2 94.0 Moderately correlated
25 ZNF732 2 28.9 Weakly correlated
26 ZNF229 1 99.0 Highly correlated
27 ZFP69 1 99.0 Highly correlated
28 ZNF273 1 28.9 Weakly correlated
29 ZNF589 1 28.9 Weakly correlated
30 ZNF679 1 28.9 Weakly correlated
31 ZNF560 1 43.0 Weakly correlated
32 ZNF92 1 28.9 Weakly correlated
33 ZNF584 1 99.0 Highly correlated
34 ZNF814 1 0.0 Weakly correlated
35 ZNF701 1 28.9 Weakly correlated
36 ZNF682 1 28.9 Weakly correlated
37 ZNF605 1 99.0 Highly correlated
38 ZNF514 1 94.0 Moderately correlated
39 ZNF471 1 94.0 Moderately correlated
40 ZNF343 1 74.0 Weakly correlated
41 ZNF334 1 99.0 Highly correlated
42 ZNF735 1 28.9 Weakly correlated
43 ZNF133 1 99.0 Highly correlated
44 ZNF101 1 43.0 Weakly correlated
45 ZKSCAN1 1 160.0 Weakly correlated
46 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF506 28.9 Weakly correlated
3 ZNF597 94.0 Moderately correlated
4 ZNF793 99.0 Highly correlated