ZRdb KZFP & Repeats
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LTR_MER21A

  • Name
    MER21A
  • Repbase
    MER21A
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000739
Description :

MER21A is a member of a closely related group of LTRs including: MER34,MER39, LTR29, LTR48 and LTR49. Has 4 bp TSDs. Note that MER stands forMEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtgttatgatatatatatnggttttcgtccacggttcctggctcataactcccatagcccttgttacagtcttttgttataatgttggggcgcgttaggcctcaggggcagcctcagaaacagaatctctgaccttctcctgccctcctttcacctgccccaaggcaggactctaatcttcccccgcctttctgattgtgggtcntaagaccctcattccagagagggtcccgccccataccctgggggaaggaatgctgcacagagaggccaagaagaatctgaacagacaggccttgctgggtttagatcataccctttttgtccaatcacatttctacagttgtccatgcttcaatcatgcctatccaatgaagcctccataaaaacccaagaggacngggttcggggagcttccggatagctgaacacgtggaggttcccgganggtgnncccggagggtggcgccccaggggcatggaagctcctgcgccccttcccccatacctcgccctacgcatctcttcatctgtatcctttgtaatatcctttataataaaccggtaaacgtaagtgtttccctgagttctgtgagccgctccagcaaattaatcgaacccaaagagggggtcgtgggaaccccaacttgaagccggtcggtcagaagttccggaggcccggacttgcgactggtgtctgggggtgggggcagtcttggggactgagccctcaacctgtgggatctgacgctatctccaggtagatagtgtcggaattgaattggaggacacccagctggtgtccgctgcttggtgtgtggggaaaaacccccacacatttggtcacagaagtcttctgtgttgatgattgttgtngtggtgtgagagcagaggaaaaacacggtttgagagagttttcccnaaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 214 28.9 Weakly correlated
2 ZNF382 74 99.0 Weakly correlated
3 ZNF766 51 43.0 Weakly correlated
4 ZNF793 42 99.0 Weakly correlated
5 ZNF175 34 94.0 Weakly correlated
6 ZNF589 32 28.9 Weakly correlated
7 ZNF263 32 180.0 Weakly correlated
8 ZNF317 25 99.0 Weakly correlated
9 ZNF75D 22 94.0 Weakly correlated
10 ZNF701 20 28.9 Weakly correlated
11 ZNF394 19 99.0 Weakly correlated
12 ZNF584 18 99.0 Weakly correlated
13 ZNF534 15 19.6 Weakly correlated
14 ZNF479 15 6.4 Weakly correlated
15 ZKSCAN8 14 160.0 Weakly correlated
16 ZIM3 13 87.0 Weakly correlated
17 ZNF506 12 28.9 Weakly correlated
18 ZFP37 12 99.0 Weakly correlated
19 ZKSCAN1 11 160.0 Weakly correlated
20 ZNF197 10 99.0 Weakly correlated
21 ZNF597 10 94.0 Weakly correlated
22 ZNF28 9 28.9 Weakly correlated
23 ZNF141 9 43.0 Weakly correlated
24 ZNF251 8 94.0 Weakly correlated
25 ZNF257 8 0.0 Weakly correlated
26 ZNF101 8 43.0 Weakly correlated
27 ZFP69B 7 99.0 Weakly correlated
28 ZNF705B 6 28.9 Weakly correlated
29 ZNF610 6 28.9 Weakly correlated
30 ZNF468 6 28.9 Weakly correlated
31 ZNF707 5 74.0 Highly correlated
32 ZNF324 5 99.0 Weakly correlated
33 ZNF274 4 99.0 Weakly correlated
34 ZNF679 4 28.9 Weakly correlated
35 ZNF558 4 99.0 Weakly correlated
36 ZNF18 4 160.0 Weakly correlated
37 ZNF705D 4 28.9 Weakly correlated
38 ZNF486 3 8.6 Weakly correlated
39 ZNF485 3 94.0 Weakly correlated
40 ZNF528 3 43.0 Weakly correlated
41 ZNF445 3 99.0 Weakly correlated
42 ZNF605 3 99.0 Weakly correlated
43 ZNF667 3 99.0 Weakly correlated
44 ZNF2 3 99.0 Weakly correlated
45 ZNF723 3 15.2 Weakly correlated
46 ZNF92 3 28.9 Weakly correlated
47 ZNF596 2 94.0 Weakly correlated
48 ZNF765 2 8.6 Weakly correlated
49 ZNF786 2 99.0 Weakly correlated
50 ZNF789 2 99.0 Weakly correlated
51 ZNF549 2 87.0 Weakly correlated
52 ZNF792 2 94.0 Weakly correlated
53 ZFP57 2 87.0 Weakly correlated
54 ZNF519 2 19.6 Weakly correlated
55 ZNF347 2 43.0 Weakly correlated
56 ZNF284 2 43.0 Weakly correlated
57 ZNF224 2 69.0 Moderately correlated
58 ZNF133 2 99.0 Weakly correlated
59 ZNF490 2 43.0 Weakly correlated
60 ZNF84 1 99.0 Weakly correlated
61 ZNF823 1 43.0 Weakly correlated
62 ZNF12 1 99.0 Weakly correlated
63 ZNF850 1 28.9 Weakly correlated
64 ZNF135 1 94.0 Weakly correlated
65 ZNF140 1 99.0 Weakly correlated
66 ZNF782 1 99.0 Weakly correlated
67 ZNF778 1 74.0 Highly correlated
68 ZNF17 1 69.0 Moderately correlated
69 ZNF182 1 99.0 Weakly correlated
70 ZNF8 1 99.0 Weakly correlated
71 ZNF736 1 43.0 Weakly correlated
72 ZNF248 1 99.0 Weakly correlated
73 ZNF320 1 28.9 Weakly correlated
74 ZKSCAN5 1 160.0 Weakly correlated
75 ZNF432 1 99.0 Weakly correlated
76 ZNF547 1 74.0 Highly correlated
77 ZNF550 1 94.0 Weakly correlated
78 ZNF554 1 99.0 Weakly correlated
79 ZNF484 1 99.0 Weakly correlated
80 ZNF471 1 94.0 Weakly correlated
81 ZNF585B 1 99.0 Weakly correlated
82 ZNF44 1 43.0 Weakly correlated
83 ZNF441 1 43.0 Weakly correlated
84 ZNF43 1 43.0 Weakly correlated
85 ZNF337 1 43.0 Weakly correlated
86 ZNF607 1 43.0 Weakly correlated
87 ZNF425 1 94.0 Weakly correlated
88 ZNF614 1 99.0 Weakly correlated
89 ZNF641 1 99.0 Weakly correlated
90 ZNF41 1 99.0 Weakly correlated
91 ZNF419 1 28.9 Weakly correlated
92 ZNF418 1 43.0 Weakly correlated
93 ZNF695 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 86 28.9 Weakly correlated
2 ZNF793 23 99.0 Weakly correlated
3 ZNF534 10 19.6 Weakly correlated
4 ZNF75D 10 94.0 Weakly correlated
5 ZNF506 9 28.9 Weakly correlated
6 ZNF597 8 94.0 Weakly correlated
7 ZNF263 8 180.0 Weakly correlated
8 ZIM3 7 87.0 Weakly correlated
9 ZNF382 7 99.0 Weakly correlated
10 ZNF479 5 6.4 Weakly correlated
11 ZNF766 4 43.0 Weakly correlated
12 ZNF468 4 28.9 Weakly correlated
13 ZNF317 4 99.0 Weakly correlated
14 ZNF605 3 99.0 Weakly correlated
15 ZNF28 3 28.9 Weakly correlated
16 ZNF701 3 28.9 Weakly correlated
17 ZNF596 2 94.0 Weakly correlated
18 ZNF257 2 0.0 Weakly correlated
19 ZNF141 2 43.0 Weakly correlated
20 ZNF133 2 99.0 Weakly correlated
21 ZNF347 1 43.0 Weakly correlated
22 ZKSCAN5 1 160.0 Weakly correlated
23 ZNF101 1 43.0 Weakly correlated
24 ZNF44 1 43.0 Weakly correlated
25 ZNF667 1 99.0 Weakly correlated
26 ZNF485 1 94.0 Weakly correlated
27 ZNF589 1 28.9 Weakly correlated
28 ZNF418 1 43.0 Weakly correlated
29 ZNF549 1 87.0 Weakly correlated
30 ZNF320 1 28.9 Weakly correlated
31 ZNF723 1 15.2 Weakly correlated
32 ZNF175 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF506 28.9 Weakly correlated
4 ZNF597 94.0 Weakly correlated
5 ZNF680 28.9 Weakly correlated
6 ZNF793 99.0 Weakly correlated