ZRdb KZFP & Repeats
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LTR_MER21-INT

  • Name
    MER21-INT
  • Repbase
    MER21I
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000769
Description :

MER21-int is the internal sequence of a common non-autonomous,MER4-group ERV element, with MER21A-C LTRs. Note that MER stands forMEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
attggtgtcagngaagtgggatttgctagaacggccctggctcacggaaacatgtggtttgggaagagaaaggataaaagggtgggggatgaggaacctttgattcctgggtggccacgtggtcacccatggtatggagccgcagctgtgctgcgatcagttactaaaggtaaaagttaccagtggaatttagagatggatccaactcccggggagttggttcactggatgcataaggaaatgcaaactaataagaaaaaagcgaaatattcaatcccttggttattgttatctgtaatagctaaaatgaaantaaaagagagtgctgggtcggaccttgatgctggaccaagctcagatttcggtnngtctgagcttnggccactagcctcaaagccgcccccnaagggnaaaattatgcagggacaacagaaagtacctctgagacctgtggttaccaagaaggtagtcaatgtgggggaagggcaaaaccaagnaactattgaaaccagagggtatagtgtgaaggaattgtttcattttgtagatcggtatcatcagcttcctgaggaacctttactaaaatggattgtgagagtaactaattaggggcagtatctttggttttaaatgctgcagagtggaaagagcatgtttgggttgatgcaggacccacagctcactattgaacaatcgcagatggntatatatgatccagacacacaggaggttattcccgagggaacagccagcctggntggactggataaaagccactgtaaggtctgtttaccctgagaagggggaactgtccgactccncctataaatgccaagtggagcaccccagatgaagcagctgatatgcttcgtatgcaagccatgtgggactggctttatgatgacngggatattcacccgctgaatatgcccgttacccaggtcatggtaaatgctgtggttaagggggccccttctgcgtggggacacccatgtaaccttactgctgcaaaaccgaacaacagttccgagaagccttatcaaatttgctgtctcagcttcccctcatgggtcttacagatgctaataaaaacattaggttaattaacaagagaatggggaaaggcaaaggggagagtcaaaggactcatccaggaaggtggaaatttttaaacggttattaagaaataaggtgaanaaagaaancattgatagggtgaaannaagaggaaagagtcatgggactcgtcccagcagggtggaaatctttagatggttattaaatgggatgaataaaaggaaattgatggggttaaaacaaaggtcttaatacaacactatcgaaggttgggtggaccaaagggagcccctgctggtcccccaacattaaagggccccaaacnagtttgctgtatttaccccagtttggagaaattttaaaagccggaaggcaaagattacaatgagaaanccgacctgnaattgcctggggcaatggtcaggcagattaatcaagataaagattgacaaaagggccagggtcccttggccnancccctggctggggacccaaagcctnttttntgcacaagagagggtaaaatggtctgggggtggagaagagaagttcctgggactagaacataaaaatgtaagggttgataggattatgaaagttggnatgtttgaacaggctttatgtgaagtggttgcgtctcctttacctgaatgtnttatgggaatggacattgtatctgactggggaacgtttcccctacctagtactgtaaaacagaaggcatgtaaatccgcccttcaagcaatattaattggacatgctaaatgggaaccagtaagattgcccgagcccacacagtgtagagtagaagctggagtgctggtagggacaaattctccgttcgatagccctntgtggagcgtnnactggggcttatggcaaaagcctgtgagcgcctcccagcgacgactactgggactttggactagagaatttccacttgaggggcatttactgccttgctatgggacgttaactgaagctacccctatgactgaaggacataaaatgatcttgaaacctgaaatacccatgctatgtcnttggtnncgngatgtcagagaaacactctaatgggatggcagtgcccagaagagttccataataaaatggaaatggtttatacaggatcatgctacctggggaatgcaaggaggagatactcacgagcagggagcctcttttcccctaggactgactctggaactgcgtgaggagctgctggattctatcgncacttggacagtgccctataaacagctctcaactgaccgacaaagagctgcttggtttgtggatggcagttccaaggtgaacggacaacatcctgtttggaaggctgccactctgatcgaagaaggtaaaaacaaatcagctcggtgggctgaattgcatgctgttttgcgatggaagaattgaacagtggtaaaagcccctgtgtttgggtttttactgactcatgggcagtggccaatggctggccatacggtcaggcaggagggcaatggaaacctggcctattaaagggatgcccatatggggcacggccctatggaaatttganggggtgcattaaagtaggacangtcgatgcccatcagaagaactcccttccaggttcggaaggtgactggaatcgacaagcagatatccccgtgtgctcccttgaggtggccacctgggtccatgaaatgagtggatatggggtactgcagcagtgcagagatgggctgaatctagacatgttcctcttgcaccctctcaggcacaaaatgccagtaagaactgttctgtctgccagcaagagagacagagactgccgatggctatggggcagattccctggtgggaaggccctgaacatagctggcaagtgagactgatgctggtagccctgngggggctacaaatgggtcttgacaggaatagacactgactctggactgggctttgcttacccggtggaagatgcaaatgctcagagtgccataaaaaaaccagaacagaagatattgcacggatttggacggccgaccgtcatttcttcagaccaaggaacacactgtacagcccataatgtccaacaatgggcagagagatatcctcctcagagtaatagtttgatagagaagtggaacgggcaattgaaacattggttgtctaaaacggggggagataaaagcatgaagggctggcttacacgccttcacgagtgtgtgctcacactcaacatgagtgggactagagtgtccccgctagatttttccgtttttctggtngatctggggaagagggggtggggaggatgctggtatgactatgcaattcttgccaagggaggagtacgctggtataacgactatanttttttctttcttccccacatcacctcaannnnttttttttcttctcctacctgatgcagtggtcctaggaccagggctgcaactacaagtgccggaagcagggatgattcctaagcaagaaactgtaactatgtttttaaanccttatgtcagaattcctaagggncctgatgggggtgggttgtgccttcaccccatctggcaaaattggggttaacagtgaatgcagctatattgcctggtggtaaaaatagcccatagttctgcaccttgtaataccctatntgaatgggagtggactgagggggaggcacttgctagactagtattgctgcctgcaatctagaccagcacagtggccgancctaatgtcccttccaaaggtgaaagtttgggtananattaatggagaaaggaggaatagtagctgagggtaaaggaatgaataaatgggttatgnantgagggaaatccaatattacattaacacctcgaaagaggctcagagcaagagatgacattgtctcttagctcaattataccagatgcctgaaagggtgaagctatatgtttgccgagaccactcctgcttttggaacctgacaagatcgaanggaagcctgcaaacctgagtggcctcaccctgggagacattcatacaatatgatggactggactaattattaatgactgnatanattcttgttttgatgtaagggatccantggtcgaaaaccagggggtggcc
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 45 99.0 Highly correlated
2 ZNF766 20 43.0 Weakly correlated
3 ZNF394 16 99.0 Highly correlated
4 ZNF263 15 180.0 Weakly correlated
5 ZIM3 13 87.0 Moderately correlated
6 ZNF789 13 99.0 Highly correlated
7 ZNF680 12 28.9 Weakly correlated
8 ZNF479 10 6.4 Weakly correlated
9 ZNF597 9 94.0 Moderately correlated
10 ZNF679 8 28.9 Weakly correlated
11 ZNF589 7 28.9 Weakly correlated
12 ZNF707 7 74.0 Weakly correlated
13 ZNF317 7 99.0 Highly correlated
14 ZFP69B 7 99.0 Highly correlated
15 ZNF75D 7 94.0 Moderately correlated
16 ZNF197 6 99.0 Highly correlated
17 ZKSCAN1 6 160.0 Weakly correlated
18 ZNF2 6 99.0 Highly correlated
19 ZNF101 6 43.0 Weakly correlated
20 ZNF18 5 160.0 Weakly correlated
21 ZNF251 5 94.0 Moderately correlated
22 ZNF257 5 0.0 Weakly correlated
23 ZNF584 5 99.0 Highly correlated
24 ZNF723 5 15.2 Weakly correlated
25 ZFP37 4 99.0 Highly correlated
26 ZNF705B 4 28.9 Weakly correlated
27 ZNF701 4 28.9 Weakly correlated
28 ZNF547 4 74.0 Weakly correlated
29 ZNF705D 4 28.9 Weakly correlated
30 ZNF175 4 94.0 Moderately correlated
31 ZNF778 4 74.0 Weakly correlated
32 ZFP69 4 99.0 Highly correlated
33 ZNF793 4 99.0 Highly correlated
34 ZKSCAN8 4 160.0 Weakly correlated
35 ZNF347 3 43.0 Weakly correlated
36 ZNF441 3 43.0 Weakly correlated
37 ZNF585A 3 99.0 Highly correlated
38 ZNF558 3 99.0 Highly correlated
39 ZNF554 3 99.0 Highly correlated
40 ZNF133 3 99.0 Highly correlated
41 ZFP57 2 87.0 Moderately correlated
42 ZNF677 2 99.0 Highly correlated
43 ZNF92 2 28.9 Weakly correlated
44 ZNF684 2 99.0 Highly correlated
45 ZNF735 2 28.9 Weakly correlated
46 ZNF716 2 19.6 Weakly correlated
47 ZNF528 2 43.0 Weakly correlated
48 ZNF506 2 28.9 Weakly correlated
49 ZNF490 2 43.0 Weakly correlated
50 ZNF485 2 94.0 Moderately correlated
51 ZNF324 2 99.0 Highly correlated
52 ZNF28 2 28.9 Weakly correlated
53 ZNF169 2 94.0 Moderately correlated
54 ZNF135 1 94.0 Moderately correlated
55 ZNF534 1 19.6 Weakly correlated
56 ZNF8 1 99.0 Highly correlated
57 ZNF845 1 28.9 Weakly correlated
58 ZNF799 1 43.0 Weakly correlated
59 ZNF140 1 99.0 Highly correlated
60 ZNF141 1 43.0 Weakly correlated
61 ZNF160 1 74.0 Weakly correlated
62 ZNF230 1 28.9 Weakly correlated
63 ZNF273 1 28.9 Weakly correlated
64 ZNF274 1 99.0 Highly correlated
65 ZNF333 1 99.0 Highly correlated
66 ZNF44 1 43.0 Weakly correlated
67 ZNF695 1 28.9 Weakly correlated
68 ZNF486 1 8.6 Weakly correlated
69 ZNF682 1 28.9 Weakly correlated
70 ZNF674 1 99.0 Highly correlated
71 ZNF671 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF789 9 99.0 Highly correlated
2 ZIM3 8 87.0 Moderately correlated
3 ZNF479 5 6.4 Weakly correlated
4 ZNF723 5 15.2 Weakly correlated
5 ZNF75D 3 94.0 Moderately correlated
6 ZFP69 3 99.0 Highly correlated
7 ZNF101 3 43.0 Weakly correlated
8 ZNF707 3 74.0 Weakly correlated
9 ZNF597 2 94.0 Moderately correlated
10 ZNF554 2 99.0 Highly correlated
11 ZNF28 2 28.9 Weakly correlated
12 ZNF735 2 28.9 Weakly correlated
13 ZNF793 2 99.0 Highly correlated
14 ZNF684 2 99.0 Highly correlated
15 ZNF263 2 180.0 Weakly correlated
16 ZNF679 2 28.9 Weakly correlated
17 ZNF705B 1 28.9 Weakly correlated
18 ZNF317 1 99.0 Highly correlated
19 ZNF2 1 99.0 Highly correlated
20 ZNF778 1 74.0 Weakly correlated
21 ZNF766 1 43.0 Weakly correlated
22 ZNF677 1 99.0 Highly correlated
23 ZNF674 1 99.0 Highly correlated
24 ZFP37 1 99.0 Highly correlated
25 ZNF682 1 28.9 Weakly correlated
26 ZNF671 1 94.0 Moderately correlated
27 ZNF589 1 28.9 Weakly correlated
28 ZNF584 1 99.0 Highly correlated
29 ZNF705D 1 28.9 Weakly correlated
30 ZNF257 1 0.0 Weakly correlated
31 ZNF175 1 94.0 Moderately correlated
32 ZNF441 1 43.0 Weakly correlated
33 ZNF197 1 99.0 Highly correlated
34 ZNF528 1 43.0 Weakly correlated
35 ZNF506 1 28.9 Weakly correlated
36 ZNF490 1 43.0 Weakly correlated
37 ZNF347 1 43.0 Weakly correlated
38 ZNF141 1 43.0 Weakly correlated
39 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats