ZRdb KZFP & Repeats
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LTR_MER11C

  • Name
    MER11C
  • Repbase
    MER11C
  • Type
    LTR
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000717
Description :

MER11C is a retroviral LTR that has been proliferated by the HERVK-related retrovirus HERVK11. Generates 6 bp TSDs. Note that MER standsfor MEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgcgggaagtcagggaccccgaacggagggaccggctgaagccatggcagaagaacgtggattgtgaagatttcatggacatttattagttccccaaattaatacttttataatttcttatgcctgtctttactgcaatctctaaacataaattgtgaagatttcatggacacttatcacttccccaatcaatacccttgtgatttcctatgcctgtctttactttaatctcttaatcctgtcagctgaggaggatgtatgtcgcctcaggaccctgtgataattgcgttaactgcacaaattgtagagcatgtgtgtttgaacaatatgaaatctgggcaccttgaaaaaagaacaggataacagcaattgttcagggaacaagagagataaccttaaactctgaccgccggtgagccgggcggaacagagccatatttctcttctttcaaaagcaaatgggagaaatatcgctgaattctttttctcagcaaggaacatccctgagaaagagaatgcgcgcctgggggtaggcctctgaantggcccccccgggcgtggcctgtcttttatggtcgagactgcaggggtgaaataagccccagtctcccatagcgctcccaggcttattaggaagaggaaattcccgcctaataaattttggtcagaccggttgctctcaaaaccctgtctcctgataagatgttatcaatgacaatggtgcccgaaacttcattagcaattttaatttcgccccggtcctgtggtcctgtgatctcgccctgcctccatttgccttgtgatattctattaccttgtgaagcacgtgatctctgtgacccacacctattcgtacactccctccccttttgaaaatccctaataaaaacttgctggtttttgcggcttgtggggcatcacggaacctaccgacatgtgatgtctcccccggacgcccagctttaaaatttctctcttttgtactctgtccctttatttctcaagccggccgacgcttagggaaaatagaaaagaacctacgtgantatcggggcaggttccccgata
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF525 442 19.6 Highly correlated
2 ZNF578 290 15.2 Moderately correlated
3 ZNF808 264 19.6 Highly correlated
4 ZNF727 120 19.6 Highly correlated
5 ZNF382 49 99.0 Weakly correlated
6 ZNF793 25 99.0 Weakly correlated
7 ZNF263 10 180.0 Weakly correlated
8 ZNF534 10 19.6 Highly correlated
9 ZNF679 9 28.9 Weakly correlated
10 ZNF680 9 28.9 Weakly correlated
11 ZNF485 8 94.0 Weakly correlated
12 ZNF528 8 43.0 Weakly correlated
13 ZNF33A 8 99.0 Weakly correlated
14 ZNF610 7 28.9 Weakly correlated
15 ZNF18 7 160.0 Weakly correlated
16 ZNF705B 6 28.9 Weakly correlated
17 ZNF425 6 94.0 Weakly correlated
18 ZNF486 6 8.6 Moderately correlated
19 ZNF394 5 99.0 Weakly correlated
20 ZNF324 5 99.0 Weakly correlated
21 ZFP37 5 99.0 Weakly correlated
22 ZNF479 5 6.4 Moderately correlated
23 ZNF766 4 43.0 Weakly correlated
24 ZNF2 4 99.0 Weakly correlated
25 ZNF320 4 28.9 Weakly correlated
26 ZNF684 4 99.0 Weakly correlated
27 ZNF554 4 99.0 Weakly correlated
28 ZNF468 3 28.9 Weakly correlated
29 ZNF530 3 28.9 Weakly correlated
30 ZNF92 3 28.9 Weakly correlated
31 ZNF547 3 74.0 Weakly correlated
32 ZNF701 3 28.9 Weakly correlated
33 ZNF695 3 28.9 Weakly correlated
34 ZNF558 3 99.0 Weakly correlated
35 ZNF568 3 99.0 Weakly correlated
36 ZNF251 3 94.0 Weakly correlated
37 ZNF8 2 99.0 Weakly correlated
38 ZNF585B 2 99.0 Weakly correlated
39 ZFP57 2 87.0 Weakly correlated
40 ZNF519 2 19.6 Highly correlated
41 ZNF816 2 28.9 Weakly correlated
42 ZNF723 2 15.2 Moderately correlated
43 ZNF705D 2 28.9 Weakly correlated
44 ZNF669 2 43.0 Weakly correlated
45 ZNF441 2 43.0 Weakly correlated
46 ZNF41 2 99.0 Weakly correlated
47 ZIM3 2 87.0 Weakly correlated
48 ZNF735 1 28.9 Weakly correlated
49 ZNF674 1 99.0 Weakly correlated
50 ZNF677 1 99.0 Weakly correlated
51 ZNF257 1 0.0 Weakly correlated
52 ZNF248 1 99.0 Weakly correlated
53 ZNF202 1 160.0 Weakly correlated
54 ZNF197 1 99.0 Weakly correlated
55 ZNF189 1 99.0 Weakly correlated
56 ZNF182 1 99.0 Weakly correlated
57 ZNF160 1 74.0 Weakly correlated
58 ZNF141 1 43.0 Weakly correlated
59 ZNF101 1 43.0 Weakly correlated
60 ZNF641 1 99.0 Weakly correlated
61 ZNF100 1 28.9 Weakly correlated
62 ZNF778 1 74.0 Weakly correlated
63 ZNF786 1 99.0 Weakly correlated
64 ZKSCAN8 1 160.0 Weakly correlated
65 ZKSCAN2 1 180.0 Weakly correlated
66 ZNF84 1 99.0 Weakly correlated
67 ZFP69 1 99.0 Weakly correlated
68 ZFP69B 1 99.0 Weakly correlated
69 ZNF331 1 94.0 Weakly correlated
70 ZNF445 1 99.0 Weakly correlated
71 ZNF440 1 28.9 Weakly correlated
72 ZNF429 1 28.9 Weakly correlated
73 ZNF417 1 28.9 Weakly correlated
74 ZNF549 1 87.0 Weakly correlated
75 ZNF343 1 74.0 Weakly correlated
76 ZNF337 1 43.0 Weakly correlated
77 ZNF561 1 43.0 Weakly correlated
78 ZNF563 1 28.9 Weakly correlated
79 ZNF564 1 74.0 Weakly correlated
80 ZNF264 1 99.0 Weakly correlated
81 ZNF28 1 28.9 Weakly correlated
82 ZNF585A 1 99.0 Weakly correlated
83 ZNF287 1 99.0 Weakly correlated
84 ZNF587 1 28.9 Weakly correlated
85 ZNF589 1 28.9 Weakly correlated
86 ZNF597 1 94.0 Weakly correlated
87 ZNF274 1 99.0 Weakly correlated
88 ZNF611 1 19.6 Highly correlated
89 ZNF506 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF525 426 19.6 Highly correlated
2 ZNF578 284 15.2 Moderately correlated
3 ZNF808 241 19.6 Highly correlated
4 ZNF727 111 19.6 Highly correlated
5 ZNF382 17 99.0 Weakly correlated
6 ZNF534 9 19.6 Highly correlated
7 ZNF263 7 180.0 Weakly correlated
8 ZNF33A 5 99.0 Weakly correlated
9 ZNF793 5 99.0 Weakly correlated
10 ZNF468 3 28.9 Weakly correlated
11 ZNF479 3 6.4 Moderately correlated
12 ZNF485 3 94.0 Weakly correlated
13 ZNF528 2 43.0 Weakly correlated
14 ZNF701 2 28.9 Weakly correlated
15 ZNF530 2 28.9 Weakly correlated
16 ZNF264 1 99.0 Weakly correlated
17 ZNF417 1 28.9 Weakly correlated
18 ZNF331 1 94.0 Weakly correlated
19 ZNF18 1 160.0 Weakly correlated
20 ZNF641 1 99.0 Weakly correlated
21 ZNF677 1 99.0 Weakly correlated
22 ZNF28 1 28.9 Weakly correlated
23 ZNF75D 1 94.0 Weakly correlated
24 ZNF587 1 28.9 Weakly correlated
25 ZNF674 1 99.0 Weakly correlated
26 ZNF425 1 94.0 Weakly correlated
27 ZNF611 1 19.6 Highly correlated
28 ZNF585A 1 99.0 Weakly correlated
29 ZNF320 1 28.9 Weakly correlated
30 ZNF197 1 99.0 Weakly correlated
31 ZNF84 1 99.0 Weakly correlated
32 ZNF695 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF382 99.0 Weakly correlated
2 ZNF534 19.6 Highly correlated
3 ZNF578 15.2 Moderately correlated