ZRdb KZFP & Repeats
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LTR_MER11B

  • Name
    MER11B
  • Repbase
    MER11B
  • Type
    LTR
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000715
Description :

MER11B is a retroviral LTR that has been proliferated by the HERVK-related retrovirus HERVK11. Generates 6 bp TSDs. Note that MER standsfor MEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgcgggaagtcagggaccccgaacggagggaccggctgaagccatggcagaagaacataaattgtgaagatttcatggacatttattagttccccaaattaatacttttataatttcttacgcctgtctttactgcaatctctgaacataaattgtgaagatttcatggacatttatcacttccccaatcaatactcttgtgatttcctatgcctgtctttactttaatctcttaatcccgtcatcttcgtaagctncgcgnnncgaggatgtatgtcgcctcaggaccctgtgatgattgcgttaactgcacaaattgtttgtagagcatgtgtgtttgaacaatatgaaatctgggcaccttgaaaaaagaacaggataacagcgatngttcagggaacaagggagataaccntaaggtctgactgcctgngggccgggcggaacagagccatatttctcttcttncaaaagcgaataggagaaatatcgctgaattctttttctcagcaaggaacanccctgagaaagagaatgcgttcccggggggaggcctctaaaatggccgctctgggagtgntctgtcttntacggttgnagatanagggatgaaataagccccggtctcccgtagcgcccccaggcttattaggacgaggaaattcccgcctagtaaattttggtcagaccggttgtctgctctcgaanccctgtctcctgataagatgttatcaatgacaatgcgtgcccgaaacttcattagcaattttaatttcgccccggtcctgtggtcctgtgatctcgccctgcctccatttgccttgtgatattttattnccttgtgaagcacgtgatctctgtgacccacgccctattcgtacacnccnncccctttcgnnnnncgnnnnnnnnnnncgncccgnnnncgcgnnnncgcgnnnncgcnccgnccccgnncgccttgtgatnttttattnccntntgaagcatgtgatctctgtgacccacaccctattcgtacactccctccccttttgaaaatcgctaataaaaacttgctggttttcgcggctcggggggcatcacggaacctgccgacatgtgatgtctcccccggacacccagctttaaaatttctctcttttgtactctttccctttatttctcagaccggccgacacttagggaaaatagaaaagaacctacgtgaatatcggggctggttccccgata
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF808 330 19.6 Highly correlated
2 ZNF525 170 19.6 Highly correlated
3 ZNF578 110 15.2 Moderately correlated
4 ZNF727 99 19.6 Highly correlated
5 ZNF382 49 99.0 Weakly correlated
6 ZNF33A 25 99.0 Weakly correlated
7 ZNF324 23 99.0 Weakly correlated
8 ZNF534 20 19.6 Highly correlated
9 ZNF554 17 99.0 Weakly correlated
10 ZNF679 15 28.9 Weakly correlated
11 ZNF528 15 43.0 Weakly correlated
12 ZNF263 11 180.0 Weakly correlated
13 ZNF701 10 28.9 Weakly correlated
14 ZNF793 10 99.0 Weakly correlated
15 ZNF610 9 28.9 Weakly correlated
16 ZNF680 8 28.9 Weakly correlated
17 ZNF674 7 99.0 Weakly correlated
18 ZNF251 7 94.0 Weakly correlated
19 ZNF425 7 94.0 Weakly correlated
20 ZNF695 6 28.9 Weakly correlated
21 ZNF18 6 160.0 Weakly correlated
22 ZNF684 5 99.0 Weakly correlated
23 ZNF479 5 6.4 Moderately correlated
24 ZNF468 5 28.9 Weakly correlated
25 ZNF611 5 19.6 Highly correlated
26 ZNF394 5 99.0 Weakly correlated
27 ZNF766 5 43.0 Weakly correlated
28 ZNF317 4 99.0 Weakly correlated
29 ZNF189 4 99.0 Weakly correlated
30 ZNF547 4 74.0 Weakly correlated
31 ZNF584 3 99.0 Weakly correlated
32 ZNF558 3 99.0 Weakly correlated
33 ZNF28 3 28.9 Weakly correlated
34 ZNF331 3 94.0 Weakly correlated
35 ZNF669 3 43.0 Weakly correlated
36 ZNF485 3 94.0 Weakly correlated
37 ZNF723 3 15.2 Moderately correlated
38 ZIM3 3 87.0 Weakly correlated
39 ZNF705B 2 28.9 Weakly correlated
40 ZNF417 2 28.9 Weakly correlated
41 ZNF2 2 99.0 Weakly correlated
42 ZNF202 2 160.0 Weakly correlated
43 ZNF136 2 74.0 Weakly correlated
44 ZNF816 2 28.9 Weakly correlated
45 ZNF133 2 99.0 Weakly correlated
46 ZNF707 1 74.0 Weakly correlated
47 ZNF735 1 28.9 Weakly correlated
48 ZNF92 1 28.9 Weakly correlated
49 ZNF778 1 74.0 Weakly correlated
50 ZNF7 1 99.0 Weakly correlated
51 ZNF84 1 99.0 Weakly correlated
52 ZNF878 1 43.0 Weakly correlated
53 ZNF8 1 99.0 Weakly correlated
54 ZFP57 1 87.0 Weakly correlated
55 ZNF333 1 99.0 Weakly correlated
56 ZFP69B 1 99.0 Weakly correlated
57 ZIK1 1 87.0 Weakly correlated
58 ZKSCAN1 1 160.0 Weakly correlated
59 ZNF101 1 43.0 Weakly correlated
60 ZNF135 1 94.0 Weakly correlated
61 ZNF182 1 99.0 Weakly correlated
62 ZNF257 1 0.0 Weakly correlated
63 ZNF264 1 99.0 Weakly correlated
64 ZNF320 1 28.9 Weakly correlated
65 ZNF589 1 28.9 Weakly correlated
66 ZNF41 1 99.0 Weakly correlated
67 ZNF483 1 99.0 Weakly correlated
68 ZNF486 1 8.6 Moderately correlated
69 ZNF519 1 19.6 Highly correlated
70 ZNF549 1 87.0 Weakly correlated
71 ZNF585A 1 99.0 Weakly correlated
72 ZNF585B 1 99.0 Weakly correlated
73 ZNF587 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF808 320 19.6 Highly correlated
2 ZNF525 166 19.6 Highly correlated
3 ZNF578 111 15.2 Moderately correlated
4 ZNF727 86 19.6 Highly correlated
5 ZNF33A 17 99.0 Weakly correlated
6 ZNF534 15 19.6 Highly correlated
7 ZNF263 9 180.0 Weakly correlated
8 ZNF468 5 28.9 Weakly correlated
9 ZNF382 5 99.0 Weakly correlated
10 ZNF674 3 99.0 Weakly correlated
11 ZNF701 3 28.9 Weakly correlated
12 ZNF189 3 99.0 Weakly correlated
13 ZIM3 2 87.0 Weakly correlated
14 ZNF684 2 99.0 Weakly correlated
15 ZNF417 2 28.9 Weakly correlated
16 ZNF479 2 6.4 Moderately correlated
17 ZNF793 2 99.0 Weakly correlated
18 ZNF707 1 74.0 Weakly correlated
19 ZNF585A 1 99.0 Weakly correlated
20 ZNF485 1 94.0 Weakly correlated
21 ZNF766 1 43.0 Weakly correlated
22 ZNF7 1 99.0 Weakly correlated
23 ZNF483 1 99.0 Weakly correlated
24 ZNF679 1 28.9 Weakly correlated
25 ZNF84 1 99.0 Weakly correlated
26 ZNF28 1 28.9 Weakly correlated
27 ZNF585B 1 99.0 Weakly correlated
28 ZNF610 1 28.9 Weakly correlated
29 ZNF611 1 19.6 Highly correlated
30 ZNF558 1 99.0 Weakly correlated
31 ZIK1 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF534 19.6 Highly correlated
3 ZNF578 15.2 Moderately correlated
4 ZNF808 19.6 Highly correlated