ZRdb KZFP & Repeats
...

LTR_MER11A

  • Name
    MER11A
  • Repbase
    MER11A
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000714
Description :

MER11A is a retroviral LTR that has been proliferated by the HERVK-related retrovirus HERVK11. Generates 6 bp TSDs. Note that MER standsfor MEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgcgggaagtcagggaccccgaacggagggaccggctggagccgcggcagaggaacataaattgtgaagatttcatnttaatatggacatttatcagttcccaaataatacttttataatttcttatgcctgtctttacttcaatctctgaacataaattgtgaagatttcatnnnnnnncggacatttatcagttcccaaataatacttttataatttcttatgcctgtctttactttaatctcttaatcctgttatcttcgtaagctgaggatgtacgtcacctcaggaccactgtgataattgtgttaactgtacaaattgattgtaaaacatgtgtgtttgaacaatatgaaatcagtgcaccttgaaaaagaacagaataacagcgattttagggaacaagggaagacaaccataaggtctgactgcctgcggggtcgggcaaaanagagccatatttttcttcttgcagagagcctataaacggacgtgcaagtaggagagatatcgctaaattcttttcctagcaaggaatattaatanttaataccctgggaaaggaatgcattcctggggggaggtctataaacggccgctctgggagtgtctgtcttatgcggttgatggacgtgcaagtaggggagatatcgctaaattcttttcctagcaaggaatattaatanttaataccctgggaaaggaatgcattcctggggggaggtctataaacggccgctctgggagtgtctgtcttatgcggttgagataaggactgagatacgccctggtctcctgcagtaccctcaggcttactagggtggggaaaaanccccgccctggtaaatttgnggtcagaccggttctctgctctcgaaccctgttttctgttgtttaagatgtttatcaagacaatacgtgcaccgctgaacatagacccttatcagtagttctgnttttgcccttgtcctgtttcctcagaagcatgtgatctttgttctgctttttgccctttgaagcatgtgatcttgtgacctactccctgttcttacaccccctccccttttgaaatccttaataaaaacttgctggttttgnggctcaggtgggcatcacggtcctaccgatatgtgatgtcacccccggcggcccagctgtaaaattcctctctttgtactctttctctttatttctcagccggccgacacttatggaaaatagaaagaacctacgttgaaatattgggggcgggttcccccgata
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF808 765 19.6 Moderately correlated
2 ZNF468 299 28.9 Highly correlated
3 ZNF33A 263 99.0 Weakly correlated
4 ZNF440 241 28.9 Highly correlated
5 ZNF433 172 43.0 Weakly correlated
6 ZNF611 149 19.6 Moderately correlated
7 ZNF382 58 99.0 Weakly correlated
8 ZNF578 58 15.2 Moderately correlated
9 ZNF766 53 43.0 Weakly correlated
10 ZNF41 47 99.0 Weakly correlated
11 ZNF554 42 99.0 Weakly correlated
12 ZNF547 37 74.0 Weakly correlated
13 ZNF679 32 28.9 Highly correlated
14 ZNF251 26 94.0 Weakly correlated
15 ZNF324 26 99.0 Weakly correlated
16 ZNF133 23 99.0 Weakly correlated
17 ZNF528 21 43.0 Weakly correlated
18 ZNF680 19 28.9 Highly correlated
19 ZNF793 19 99.0 Weakly correlated
20 ZNF695 18 28.9 Highly correlated
21 ZNF479 14 6.4 Weakly correlated
22 ZNF394 13 99.0 Weakly correlated
23 ZNF701 13 28.9 Highly correlated
24 ZNF585A 12 99.0 Weakly correlated
25 ZNF197 11 99.0 Weakly correlated
26 ZNF534 11 19.6 Moderately correlated
27 ZNF610 11 28.9 Highly correlated
28 ZNF878 10 43.0 Weakly correlated
29 ZIM3 8 87.0 Weakly correlated
30 ZNF445 8 99.0 Weakly correlated
31 ZNF558 7 99.0 Weakly correlated
32 ZNF84 7 99.0 Weakly correlated
33 ZNF8 6 99.0 Weakly correlated
34 ZFP69B 5 99.0 Weakly correlated
35 ZNF18 5 160.0 Weakly correlated
36 ZNF248 5 99.0 Weakly correlated
37 ZNF264 5 99.0 Weakly correlated
38 ZNF486 5 8.6 Weakly correlated
39 ZFP37 4 99.0 Weakly correlated
40 ZNF101 4 43.0 Weakly correlated
41 ZNF136 4 74.0 Weakly correlated
42 ZNF182 4 99.0 Weakly correlated
43 ZNF257 4 0.0 Weakly correlated
44 ZNF2 4 99.0 Weakly correlated
45 ZNF585B 4 99.0 Weakly correlated
46 ZNF727 4 19.6 Moderately correlated
47 ZFP57 3 87.0 Weakly correlated
48 ZKSCAN1 3 160.0 Weakly correlated
49 ZNF28 3 28.9 Highly correlated
50 ZNF483 3 99.0 Weakly correlated
51 ZNF485 3 94.0 Weakly correlated
52 ZNF525 3 19.6 Moderately correlated
53 ZNF549 3 87.0 Weakly correlated
54 ZNF584 3 99.0 Weakly correlated
55 ZNF589 3 28.9 Highly correlated
56 ZNF669 3 43.0 Weakly correlated
57 ZNF705B 3 28.9 Highly correlated
58 ZNF705D 3 28.9 Highly correlated
59 ZNF723 3 15.2 Moderately correlated
60 ZNF75D 3 94.0 Weakly correlated
61 ZIK1 2 87.0 Weakly correlated
62 ZKSCAN8 2 160.0 Weakly correlated
63 ZNF175 2 94.0 Weakly correlated
64 ZNF189 2 99.0 Weakly correlated
65 ZNF30 2 94.0 Weakly correlated
66 ZNF317 2 99.0 Weakly correlated
67 ZNF320 2 28.9 Highly correlated
68 ZNF331 2 94.0 Weakly correlated
69 ZNF441 2 43.0 Weakly correlated
70 ZNF44 2 43.0 Weakly correlated
71 ZNF490 2 43.0 Weakly correlated
72 ZNF573 2 94.0 Weakly correlated
73 ZNF674 2 99.0 Weakly correlated
74 ZNF675 2 8.6 Weakly correlated
75 ZNF778 2 74.0 Weakly correlated
76 ZNF816 2 28.9 Highly correlated
77 ZNF92 2 28.9 Highly correlated
78 ZFP28 1 99.0 Weakly correlated
79 ZFP30 1 99.0 Weakly correlated
80 ZNF100 1 28.9 Highly correlated
81 ZNF157 1 99.0 Weakly correlated
82 ZNF160 1 74.0 Weakly correlated
83 ZNF17 1 69.0 Weakly correlated
84 ZNF211 1 94.0 Weakly correlated
85 ZNF222 1 43.0 Weakly correlated
86 ZNF224 1 69.0 Weakly correlated
87 ZNF230 1 28.9 Highly correlated
88 ZNF284 1 43.0 Weakly correlated
89 ZNF334 1 99.0 Weakly correlated
90 ZNF34 1 99.0 Weakly correlated
91 ZNF37A 1 99.0 Weakly correlated
92 ZNF417 1 28.9 Highly correlated
93 ZNF429 1 28.9 Highly correlated
94 ZNF443 1 19.6 Moderately correlated
95 ZNF519 1 19.6 Moderately correlated
96 ZNF529 1 99.0 Weakly correlated
97 ZNF530 1 28.9 Highly correlated
98 ZNF557 1 15.2 Moderately correlated
99 ZNF561 1 43.0 Weakly correlated
100 ZNF564 1 74.0 Weakly correlated
101 ZNF567 1 99.0 Weakly correlated
102 ZNF586 1 43.0 Weakly correlated
103 ZNF587 1 28.9 Highly correlated
104 ZNF616 1 43.0 Weakly correlated
105 ZNF677 1 99.0 Weakly correlated
106 ZNF684 1 99.0 Weakly correlated
107 ZNF689 1 99.0 Weakly correlated
108 ZNF707 1 74.0 Weakly correlated
109 ZNF716 1 19.6 Moderately correlated
110 ZNF75A 1 94.0 Weakly correlated
111 ZNF77 1 87.0 Weakly correlated
112 ZNF786 1 99.0 Weakly correlated
113 ZNF823 1 43.0 Weakly correlated
114 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF808 752 19.6 Moderately correlated
2 ZNF468 288 28.9 Highly correlated
3 ZNF440 230 28.9 Highly correlated
4 ZNF33A 192 99.0 Weakly correlated
5 ZNF433 158 43.0 Weakly correlated
6 ZNF578 48 15.2 Moderately correlated
7 ZNF585A 10 99.0 Weakly correlated
8 ZNF701 9 28.9 Highly correlated
9 ZNF793 8 99.0 Weakly correlated
10 ZNF197 6 99.0 Weakly correlated
11 ZNF766 5 43.0 Weakly correlated
12 ZNF534 5 19.6 Moderately correlated
13 ZNF84 4 99.0 Weakly correlated
14 ZNF479 4 6.4 Weakly correlated
15 ZNF485 3 94.0 Weakly correlated
16 ZNF695 3 28.9 Highly correlated
17 ZNF248 3 99.0 Weakly correlated
18 ZNF525 3 19.6 Moderately correlated
19 ZNF528 3 43.0 Weakly correlated
20 ZNF611 3 19.6 Moderately correlated
21 ZNF483 3 99.0 Weakly correlated
22 ZIK1 2 87.0 Weakly correlated
23 ZNF680 2 28.9 Highly correlated
24 ZNF589 2 28.9 Highly correlated
25 ZIM3 2 87.0 Weakly correlated
26 ZNF558 2 99.0 Weakly correlated
27 ZNF41 2 99.0 Weakly correlated
28 ZNF674 2 99.0 Weakly correlated
29 ZNF584 2 99.0 Weakly correlated
30 ZNF445 2 99.0 Weakly correlated
31 ZNF28 2 28.9 Highly correlated
32 ZNF878 1 43.0 Weakly correlated
33 ZNF530 1 28.9 Highly correlated
34 ZNF679 1 28.9 Highly correlated
35 ZKSCAN1 1 160.0 Weakly correlated
36 ZNF561 1 43.0 Weakly correlated
37 ZFP69B 1 99.0 Weakly correlated
38 ZNF816 1 28.9 Highly correlated
39 ZNF723 1 15.2 Moderately correlated
40 ZNF567 1 99.0 Weakly correlated
41 ZNF189 1 99.0 Weakly correlated
42 ZNF716 1 19.6 Moderately correlated
43 ZNF75D 1 94.0 Weakly correlated
44 ZNF417 1 28.9 Highly correlated
45 ZNF573 1 94.0 Weakly correlated
46 ZFP37 1 99.0 Weakly correlated
47 ZNF44 1 43.0 Weakly correlated
48 ZNF727 1 19.6 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF197 99.0 Weakly correlated
2 ZNF440 28.9 Highly correlated
3 ZNF468 28.9 Highly correlated
4 ZNF578 15.2 Moderately correlated
5 ZNF585A 99.0 Weakly correlated
6 ZNF701 28.9 Highly correlated
7 ZNF808 19.6 Moderately correlated