ZRdb KZFP & Repeats
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LTR_MER110A

  • Name
    MER110A
  • Repbase
    MER110A
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000706
Description :

Similar to MER110 in the 3' region, and more modestly, to MER90a acrossthat same region. Note that MER stands for MEdium Reiteration frequencyinterspersed repeat. As such, MERs as a group are a grab bag of DNAtransposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaaccgaaaccatctaccacccacacagcttactgnctgtctacattaacatgactttactattccactgtcttcatcaacatgactttactattccaggaaactcttgcccaggaagataaaagttgcaaataactttattgttcattncaggaacttcccgaaagacccatcaactcttcaatagaaagcatcaaacgacagtttatccccaagactctttgaanccctcgcctcaaaatcctcgccttgctgtgtctncgtccaccaatcctaaactattatatcatgatccttacccaatcctaatcaagcccccgcattgaaagacccgccttaaaccagactccaaaatctcaataaatatcccgactttgccctccctcctctgagacgctactaagactctgtaaggtggtgctctcccttaccgcggtaagcaataaactcagctttgtcttatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 35 99.0 Highly correlated
2 ZNF766 10 43.0 Weakly correlated
3 ZNF2 7 99.0 Highly correlated
4 ZNF534 7 19.6 Weakly correlated
5 ZFP37 6 99.0 Highly correlated
6 ZNF101 6 43.0 Weakly correlated
7 ZNF394 6 99.0 Highly correlated
8 ZNF263 5 180.0 Weakly correlated
9 ZNF554 5 99.0 Highly correlated
10 ZNF175 5 94.0 Moderately correlated
11 ZNF701 5 28.9 Weakly correlated
12 ZNF680 4 28.9 Weakly correlated
13 ZNF251 4 94.0 Moderately correlated
14 ZFP69B 4 99.0 Highly correlated
15 ZNF589 3 28.9 Weakly correlated
16 ZNF558 3 99.0 Highly correlated
17 ZNF584 3 99.0 Highly correlated
18 ZNF331 3 94.0 Moderately correlated
19 ZNF257 3 0.0 Weakly correlated
20 ZNF197 3 99.0 Highly correlated
21 ZNF18 3 160.0 Weakly correlated
22 ZKSCAN1 3 160.0 Weakly correlated
23 ZNF248 2 99.0 Highly correlated
24 ZNF610 2 28.9 Weakly correlated
25 ZNF792 2 94.0 Moderately correlated
26 ZNF679 2 28.9 Weakly correlated
27 ZNF506 2 28.9 Weakly correlated
28 ZNF816 1 28.9 Weakly correlated
29 ZNF93 1 8.6 Weakly correlated
30 ZFP30 1 99.0 Highly correlated
31 ZNF92 1 28.9 Weakly correlated
32 ZNF878 1 43.0 Weakly correlated
33 ZNF677 1 99.0 Highly correlated
34 ZNF695 1 28.9 Weakly correlated
35 ZNF723 1 15.2 Weakly correlated
36 ZNF730 1 19.6 Weakly correlated
37 ZNF793 1 99.0 Highly correlated
38 ZNF597 1 94.0 Moderately correlated
39 ZNF563 1 28.9 Weakly correlated
40 ZNF519 1 19.6 Weakly correlated
41 ZNF490 1 43.0 Weakly correlated
42 ZNF486 1 8.6 Weakly correlated
43 ZNF479 1 6.4 Weakly correlated
44 ZNF44 1 43.0 Weakly correlated
45 ZNF440 1 28.9 Weakly correlated
46 ZNF431 1 28.9 Weakly correlated
47 ZNF425 1 94.0 Moderately correlated
48 ZNF324 1 99.0 Highly correlated
49 ZNF317 1 99.0 Highly correlated
50 ZNF182 1 99.0 Highly correlated
51 ZNF141 1 43.0 Weakly correlated
52 ZKSCAN8 1 160.0 Weakly correlated
53 ZIM3 1 87.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 6 19.6 Weakly correlated
2 ZNF257 2 0.0 Weakly correlated
3 ZNF589 2 28.9 Weakly correlated
4 ZNF197 2 99.0 Highly correlated
5 ZNF18 2 160.0 Weakly correlated
6 ZNF382 2 99.0 Highly correlated
7 ZNF701 2 28.9 Weakly correlated
8 ZNF479 1 6.4 Weakly correlated
9 ZNF93 1 8.6 Weakly correlated
10 ZNF425 1 94.0 Moderately correlated
11 ZNF331 1 94.0 Moderately correlated
12 ZNF816 1 28.9 Weakly correlated
13 ZNF141 1 43.0 Weakly correlated
14 ZNF723 1 15.2 Weakly correlated
15 ZNF680 1 28.9 Weakly correlated
16 ZNF554 1 99.0 Highly correlated
17 ZNF44 1 43.0 Weakly correlated
18 ZNF175 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF534 19.6 Weakly correlated