ZRdb KZFP & Repeats
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LTR_MER110

  • Name
    MER110
  • Repbase
    MER110
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000705
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaactgaaaccaacataatttcctgtccctgtgttaaacaatactgggaccaggcatactttcctgtccctgtgttaaacaatactgagaccaagcaaaaataacttagctgcttgctccaggaaatacttgctcctggaagataagactgtgaaccaactaaaacagcttacttatcaagactaacagcttactcatcaagactcgcttcaagaccctcgcctcgctgtgcccaccaatccaaagctattatgtcataaactctgcccaatcccaaccagttccccgccttgnaagacccgccttaaaatcacccagcccaggccctaaaaccctataaatantcctnccctgactttcccnttctgagacactactaagactctgtcaaggtggtgttctcccttactgcagtaagtctaataaacttagctttgcttgatcaacaggtttttctggtggtctttttggggagtcgacagtcgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 25 99.0 Highly correlated
2 ZNF766 13 43.0 Weakly correlated
3 ZFP37 11 99.0 Highly correlated
4 ZNF589 10 28.9 Weakly correlated
5 ZNF701 9 28.9 Weakly correlated
6 ZNF18 8 160.0 Weakly correlated
7 ZNF197 6 99.0 Highly correlated
8 ZNF2 6 99.0 Highly correlated
9 ZNF101 5 43.0 Weakly correlated
10 ZKSCAN8 5 160.0 Weakly correlated
11 ZNF584 5 99.0 Highly correlated
12 ZNF394 5 99.0 Highly correlated
13 ZNF317 4 99.0 Highly correlated
14 ZFP69B 4 99.0 Highly correlated
15 ZKSCAN1 4 160.0 Weakly correlated
16 ZNF175 3 94.0 Moderately correlated
17 ZNF558 3 99.0 Highly correlated
18 ZNF679 3 28.9 Weakly correlated
19 ZNF8 2 99.0 Highly correlated
20 ZNF610 2 28.9 Weakly correlated
21 ZNF680 2 28.9 Weakly correlated
22 ZNF485 2 94.0 Moderately correlated
23 ZNF723 2 15.2 Weakly correlated
24 ZNF792 2 94.0 Moderately correlated
25 ZNF251 2 94.0 Moderately correlated
26 ZNF331 2 94.0 Moderately correlated
27 ZNF324 2 99.0 Highly correlated
28 ZNF534 2 19.6 Weakly correlated
29 ZNF263 1 180.0 Weakly correlated
30 ZFP57 1 87.0 Moderately correlated
31 ZNF12 1 99.0 Highly correlated
32 ZNF786 1 99.0 Highly correlated
33 ZNF182 1 99.0 Highly correlated
34 ZNF75D 1 94.0 Moderately correlated
35 ZNF75A 1 94.0 Moderately correlated
36 ZNF735 1 28.9 Weakly correlated
37 ZNF707 1 74.0 Weakly correlated
38 ZNF705B 1 28.9 Weakly correlated
39 ZNF354C 1 99.0 Highly correlated
40 ZNF468 1 28.9 Weakly correlated
41 ZNF471 1 94.0 Moderately correlated
42 ZNF573 1 94.0 Moderately correlated
43 ZNF479 1 6.4 Weakly correlated
44 ZNF554 1 99.0 Highly correlated
45 ZNF549 1 87.0 Moderately correlated
46 ZNF547 1 74.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF701 5 28.9 Weakly correlated
2 ZNF197 3 99.0 Highly correlated
3 ZNF589 3 28.9 Weakly correlated
4 ZNF584 2 99.0 Highly correlated
5 ZNF175 2 94.0 Moderately correlated
6 ZNF534 1 19.6 Weakly correlated
7 ZNF471 1 94.0 Moderately correlated
8 ZNF735 1 28.9 Weakly correlated
9 ZNF573 1 94.0 Moderately correlated
10 ZNF766 1 43.0 Weakly correlated
11 ZNF317 1 99.0 Highly correlated
12 ZFP57 1 87.0 Moderately correlated
13 ZNF723 1 15.2 Weakly correlated
14 ZNF485 1 94.0 Moderately correlated
15 ZNF101 1 43.0 Weakly correlated
16 ZKSCAN8 1 160.0 Weakly correlated
17 ZKSCAN1 1 160.0 Weakly correlated
18 ZIM3 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats