ZRdb KZFP & Repeats
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LTR_MER110-INT

  • Name
    MER110-INT
  • Repbase
    MER110I
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000707
Description :

Associated with MER110 or MER110A LTRs. This reconstruction may miss alarge fragment towards the 5' end. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
attctggaggcccatnnagntccantcgagacnccctcaccaccacagnccgagatcctatcctaaccataattctccacaagtttgcacnnaacacactgcttaaacnagaagctaaagaaaggctaaaaccaatcgttnaaggcctttataganaaaggactcatcataccttgtaccagtccttgtaatactcccatcctcccagtcaaaaagccaatgggaaaggatatngatttgttaagacctcagggccataaataaaatagtcattcctagacnccctgcgttgtacctacaatactattttactgttagcctcctgnnactgcaagccacttatacagttgtagatctgtgttctgcnttttttagtgtncctntagatcaaaatagtcaatatttgtttgccttctcctgggaaaatcaacaatatacctggacagttgttatccccagggntncactgaaggcnctncttacttttnncaagtcctcaacgcagaattncgaggaccttaaatttccaaattctnctgtattctactcttatccaatatgtggatgaccttttgttgtgttctnaaagatgaggtgagctctaagactgattccatctatctacttactgttttagctcagaaagggcataggtttccaaaganaaagttttacctttgtnaaagtaaagttcantcctaggacatgatttatcccaaggagataaatcccttacttctgacagactacaggccattcgaaactttcccaggccagtaactaagagacaattaagaagattcctgggtccgctgccccnaatgcagcgngttcncaacttttctgaaattgccacgccactatatgactnaactctcgagtaccaaacctcttccctgggancctaaacatgaacagactttttgtgagttattagcnctccttaacgacctcccaccctggnntacctaattttcataaaactctctacttatttgtncatgagagatntggacaagcccttggtgttctgacaagagcctacccgccttgtaaaggcagcagctaacatggacntctccggcttggttttaggatctcttaagtnatagccctcattctacaatctttgctgctcactgaaaatacagcttctcagcaagaggcttacctatgaancattttctaacattccccgtccatattgtaatactttaaatcctgcacttctcattacccgaaagaagaaactcgtctaacctctgttcgcgaactntctatgccctaaatagatttattagaaattccttaggaatccagacttaatcttgtttgttgatgggtcatatcttaanantgatatcgcagcnaaattgaacntaagaatatnaccccttaccagaagcaaaatctgcccagatggnagaactcantgcacgcnccagagtctgccagttgctagagataaaaggataatntacactgagatggagatacgcnttttgganggtagtcatgtttggnaatgctttgaaacaagagttcttgacctcagcaggaactccaaagaatgntcagcagaattaaagaactttcgatgctctaatgcttctaaggagatacttaaaagtaggagctcanacaaaagcggataacgtggaggctaaaggaaatccctacggctgatcactatgcagacnagcagcattcactaagatcctggccctcatgacantccaaagagtctttggagaggttcaaagaggccttttaaatgccagcgatcggctccagantcagaaaannagtactaggagaaaanatctggatgtaaattgcatgaggataatctctggcgctctcaggatgnctgntagcaccggaggacctcaaatggaaacttncanaaaattttacatgaaattaccacnacagcaaggacaaattggccagnacaaatcggccantacattngtggggaaaattttactaaaattctgaggatgtctccggtgcatgtctcacctgtcancagcataatcctggcaaaactgtaaaggtgggacatggacaagagccnaaatagagcccctttgaacacctccaaatggatttcatacatctctcctgcaatgggttttgaatatgttctgtcattgtttgcttattctcgggatggattgaagcctttccttgccggagagctacggctctaacggtagcagaaaatnttacttgattttgtnttcccaacctggggaattcctaaactatctctccagtgacagaggnacccattttactgggactgttattaaagagctttgcaaagctttgccncttactcagaaacttcactgtccntatcatcccaatcttcggaaaagnagaaagaacnaatggaattctaaaactaaaattagcaaagctctcagagaccctcgaacttccatggcctaaggtattnccattggctttaatgacaataagatcaactccttctgggattcaccgactntccccttatgagttagtaacaggccgncccatgcatctaggaatatcacctctgattctagactccgcnctattacaagcagacatggccaaatactgcaagggactcatgcaatacacccagtcttatcatcaacaggtacgagcagcctttcctcaacatcctcctaaacaacccttgcatgacctaaaacctggagatnttctctaaaagacaccagagaaagactgcccttgaaccccgatggaaaggaccttatcaggtactgttaactaacacagcagtaaaactccaaggngttgatccttggatcatatgtctcnctagcaaaagacataacatcctcggatcactggaaanccgttccnaccggagacctcaagctgaggattttaggaatcctccagaagcagacggtcttcggaagagacagcttccgccaagaccttcggatcaagtagacgactgcatgaggtagaattccacccaagacccacggaacaagatccagataacnagagccacagatttcatgctttaatctgcattctttgttctttattttcctagtatttcttttctctttctgcttaaggttctggttattaaggttnacctttaattatgttacctataaggcccctattaatattgctttttgcatccttagtcactccttggtatgagtccaataccgggcaatttattnttaacggctggcaaaacatacaatcaaacnaaccgtttttgcacncattttcctttgggngccacccagcttcctttggtaccagttcttgtaatgaatcagttggtttcctgggtaattggactcaactactagaagcattttttagatgacaaacaccaacaggccaganagccagaaatctaaaaccccctatcacgtcgtacctagaaagggaggttcctgtctccacagaaacacttngaggacctttcgtaggagctagcttttgtaaccgaactttcacagaaatagagcttggaagagaactagggaacagatggtatatatttggaggctgtctcacttttacagatcttacaagtaagacacactacttcacttttgctttagatctacctaatgatctcnatactacaaatttcattgcctggcgccggaccactcttgatgagtggtgccaaaacgttacaatacaatatttcaatcccataggggtattttggccgaaaacagatcattggtggcccccaatgactggtattggatttgtggcacaaaagcctattggctactacctgcaaactggacagggacttgttaccttggtaaactgatgcctgccttcaggatagtccctgatcacccagggtccattttngacccatcaatttcccctctnggaaaaagagatcttagatacagattttaagaagaaaaactgggcncgacttgatttgagaaccgaaacttaaccactnaaggggaattctggattttctttctcctagcccttcactttatactttnctaaaagccnaaaagtagggaaatcctacatgctatggttcagagaatgcaggagagctagacaatgtcaccaaggcatagaactcctcgcctaaaggagttcatgaaattggacaggcggtggttcaaaatagagccgctttagatataatattggcctctcgaggggaanatgtgctgtcttaggggaagaatgttgtacttacatccctacagacctctctgggatctttaatattacaaaaagactaggaagcaaacaaagaaacataaaattaggtaatttggctaataccccatatctggttctgcgggctcttcggattggggatgggatctgttctcttggtttaatttgggcactcttggctcctggcttagaagtggactacaaactctgatcataatccttctcttagtattttctgtgttgcagtgttcagatgtgtgatctccaggtcttaaatgctgctgcgcagccgctgtccgtcatcaancangatccaacaaatgatcatccaacaaaaagaacagaaaacctgcacattatagaggttgaaacgaccaccaccagaaactcgacacgtgaccatgacacntcaaacagcag
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 14 15.2 Weakly correlated
2 ZNF680 9 28.9 Weakly correlated
3 ZNF766 6 43.0 Weakly correlated
4 ZNF382 6 99.0 Highly correlated
5 ZNF2 6 99.0 Highly correlated
6 ZNF317 5 99.0 Highly correlated
7 ZNF679 4 28.9 Weakly correlated
8 ZNF394 4 99.0 Highly correlated
9 ZFP37 3 99.0 Highly correlated
10 ZNF793 2 99.0 Highly correlated
11 ZNF534 2 19.6 Weakly correlated
12 ZNF28 2 28.9 Weakly correlated
13 ZNF701 2 28.9 Weakly correlated
14 ZIM3 2 87.0 Moderately correlated
15 ZNF778 2 74.0 Weakly correlated
16 ZNF75A 1 94.0 Moderately correlated
17 ZNF605 1 99.0 Highly correlated
18 ZNF44 1 43.0 Weakly correlated
19 ZNF597 1 94.0 Moderately correlated
20 ZNF585A 1 99.0 Highly correlated
21 ZNF558 1 99.0 Highly correlated
22 ZNF554 1 99.0 Highly correlated
23 ZNF485 1 94.0 Moderately correlated
24 ZNF429 1 28.9 Weakly correlated
25 ZNF425 1 94.0 Moderately correlated
26 ZNF264 1 99.0 Highly correlated
27 ZNF251 1 94.0 Moderately correlated
28 ZNF197 1 99.0 Highly correlated
29 ZNF18 1 160.0 Weakly correlated
30 ZFP69B 1 99.0 Highly correlated
31 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 12 15.2 Weakly correlated
2 ZNF680 2 28.9 Weakly correlated
3 ZFP37 1 99.0 Highly correlated
4 ZNF534 1 19.6 Weakly correlated
5 ZNF28 1 28.9 Weakly correlated
6 ZNF429 1 28.9 Weakly correlated
7 ZNF264 1 99.0 Highly correlated
8 ZNF585A 1 99.0 Highly correlated
9 ZNF382 1 99.0 Highly correlated
10 ZNF793 1 99.0 Highly correlated
11 ZNF766 1 43.0 Weakly correlated
12 ZNF197 1 99.0 Highly correlated
13 ZNF44 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats