ZRdb KZFP & Repeats
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LTR_MER101B

  • Name
    MER101B
  • Repbase
    MER101B
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000695
Description :

MER stands for MEdium Reiteration frequency interspersed repeat. Assuch, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaaagtatgcccccggccgacagacaaaatggactccccgtggctaactgaggtgctcaaagttaaaacagaaccaggcggccatggctgggtgagggagcggtcacgtactctgtgttctcagaaagatgtaaaagtgtcacaggacctccctttctacaatcaagccaaaccagttcctgttgtcggtgccaagataaactgcggccggaaaccncctccccacangcccactngaaagaaacatctgacagagacttctggtttggggcttggaaaccaaccaatcagagctcacctgccccggccaatcagggctcagctgtatcgaccaatcagaactcagctgcgccgaccaatcagaactaagcaagtttnaatccttcatttgcataaacggacctgattgggaacctgggcgggaactttcgctataaaacccgaaccttcctttgttctccggaangcaccttcattttacaccgaaggctgcgtctccccggtttgcaaactgttcactggaataaactctcctccaaattccttttcagagaacttttgttcaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 9 43.0 Weakly correlated
2 ZNF382 9 99.0 Weakly correlated
3 ZNF701 5 28.9 Weakly correlated
4 ZNF534 5 19.6 Weakly correlated
5 ZNF705D 3 28.9 Weakly correlated
6 ZNF479 2 6.4 Weakly correlated
7 ZNF823 2 43.0 Weakly correlated
8 ZNF793 2 99.0 Weakly correlated
9 ZNF705B 2 28.9 Weakly correlated
10 ZNF680 2 28.9 Weakly correlated
11 ZNF679 2 28.9 Weakly correlated
12 ZNF597 2 94.0 Weakly correlated
13 ZFP57 2 87.0 Highly correlated
14 ZNF133 2 99.0 Weakly correlated
15 ZNF175 2 94.0 Weakly correlated
16 ZNF331 2 94.0 Weakly correlated
17 ZNF28 2 28.9 Weakly correlated
18 ZNF610 1 28.9 Weakly correlated
19 ZIM3 1 87.0 Highly correlated
20 ZNF723 1 15.2 Weakly correlated
21 ZNF18 1 160.0 Weakly correlated
22 ZNF197 1 99.0 Weakly correlated
23 ZNF251 1 94.0 Weakly correlated
24 ZNF2 1 99.0 Weakly correlated
25 ZNF347 1 43.0 Weakly correlated
26 ZNF324 1 99.0 Weakly correlated
27 ZNF563 1 28.9 Weakly correlated
28 ZNF519 1 19.6 Weakly correlated
29 ZNF506 1 28.9 Weakly correlated
30 ZNF485 1 94.0 Weakly correlated
31 ZNF337 1 43.0 Weakly correlated
32 ZNF471 1 94.0 Weakly correlated
33 ZNF394 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 2 19.6 Weakly correlated
2 ZNF133 1 99.0 Weakly correlated
3 ZNF347 1 43.0 Weakly correlated
4 ZNF471 1 94.0 Weakly correlated
5 ZNF701 1 28.9 Weakly correlated
6 ZNF485 1 94.0 Weakly correlated
7 ZNF793 1 99.0 Weakly correlated
8 ZNF331 1 94.0 Weakly correlated
9 ZNF2 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats