ZRdb KZFP & Repeats
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LTR_MER101

  • Name
    MER101
  • Repbase
    MER101
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000768
Description :

MER101's hallmarks are 4 bp TSD and 10 bp TIR. Weak similarity to theMER65C and MER87, and the target site length indicate that MER101 maybe a long terminal repeat related to the MER4-int group. MER stands forMEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgaacaaatgtgaacctgaaagagccaatccttcaagatggatcccgagtggctaactgggcctaaatttaaaatagagccaagcggccatttgctgactagaggtcacacacgtactctgagttccccgaaaacccacacctctgtttaactttgggactttcagagctcacctgaaccaaccaatcagagctcacctgcctcgaccaatcagggctcagctgtatcgaccaatcagaactcagctgcgtcgaccaatcagaactaagcaagtttgaatccttcatttgcataaacggacctgattgggaacctgggcgggaactttcgctataaaacccgaaccctccctttgttctctggaaccgcaccttcgttttacaccgaaggctgcgtctccccggtttgcaaactgttcactggaataaagtctctttcctccaaattccttttcagagaacttttgttcaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 11 99.0 Weakly correlated
2 ZNF766 8 43.0 Weakly correlated
3 ZNF394 7 99.0 Weakly correlated
4 ZNF18 7 160.0 Weakly correlated
5 ZKSCAN1 6 160.0 Weakly correlated
6 ZNF2 5 99.0 Weakly correlated
7 ZNF263 4 180.0 Weakly correlated
8 ZNF589 4 28.9 Weakly correlated
9 ZNF597 4 94.0 Weakly correlated
10 ZNF680 4 28.9 Weakly correlated
11 ZNF707 4 74.0 Highly correlated
12 ZNF175 4 94.0 Weakly correlated
13 ZNF101 4 43.0 Weakly correlated
14 ZNF705D 3 28.9 Weakly correlated
15 ZNF75D 3 94.0 Weakly correlated
16 ZNF705B 3 28.9 Weakly correlated
17 ZNF701 3 28.9 Weakly correlated
18 ZNF140 3 99.0 Weakly correlated
19 ZNF92 2 28.9 Weakly correlated
20 ZNF793 2 99.0 Weakly correlated
21 ZNF669 2 43.0 Weakly correlated
22 ZNF616 2 43.0 Weakly correlated
23 ZFP69B 2 99.0 Weakly correlated
24 ZNF584 2 99.0 Weakly correlated
25 ZNF558 2 99.0 Weakly correlated
26 ZNF554 2 99.0 Weakly correlated
27 ZNF350 2 99.0 Weakly correlated
28 ZNF251 2 94.0 Weakly correlated
29 ZNF197 2 99.0 Weakly correlated
30 ZNF17 2 69.0 Moderately correlated
31 ZKSCAN8 2 160.0 Weakly correlated
32 ZNF534 1 19.6 Weakly correlated
33 ZNF506 1 28.9 Weakly correlated
34 ZNF486 1 8.6 Weakly correlated
35 ZNF679 1 28.9 Weakly correlated
36 ZNF479 1 6.4 Weakly correlated
37 ZNF324 1 99.0 Weakly correlated
38 ZNF182 1 99.0 Weakly correlated
39 ZNF180 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF101 2 43.0 Weakly correlated
2 ZNF140 2 99.0 Weakly correlated
3 ZNF701 2 28.9 Weakly correlated
4 ZNF18 2 160.0 Weakly correlated
5 ZNF382 2 99.0 Weakly correlated
6 ZNF75D 1 94.0 Weakly correlated
7 ZNF793 1 99.0 Weakly correlated
8 ZNF766 1 43.0 Weakly correlated
9 ZNF597 1 94.0 Weakly correlated
10 ZNF680 1 28.9 Weakly correlated
11 ZNF506 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats