ZRdb KZFP & Repeats
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LTR_MER101-INT

  • Name
    MER101-INT
  • Repbase
    MER101_I
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000700
Description :

Probably non-autonomous. Closest to PRIMA4-int. MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttcttggcgtcagaagcgggatntgaagcaatcccgattctcctcccggcgccgtcctnaaccaatgcattggcgcctgcaagagccccttgagctcagttgtcttctcgctggagncgccaggatggggacgggtggggnggtggcctcnggtaagtcctcctgaattcagacctcccacgctttggttgaggtctcagagactttttctccnnangcctcntccatcgnctccgaanggncttcttttanccntggnctcgnnnnnnnctccccggccggtccccccatctggaccccgaaggggacntttcctttggccccgggtttagggggggnccttcccanccggttccctccatccggaccccggaggggccttccctgttgccccgggtttggnaggggcttcccagtcaactcggccggtccataaggttttgtggggacgctcacgctaagggcactggaagggacgccttcgtcaggtnagtgcaatgggtaacccgtgttttaagttttccctgntgatcagccgccttccggcactccagctggctttacgagcaaaaattatggtccggggagttgnaattggctgggtctctggacaaaaattacccaggataatcttaaactttnttggccaaaatggggctcctttgaaattccaaaacttgcctatctgcgcgcacaattggaanaaagaaaacaccgaacctcccagagacaatgggaagcctttttcaattggtactttgaaagttctaaatggaatcaagaggctaccattgcctcccttagggaaaataattccaaattgagtgagcgccttaatgaaatagaaagagattagtgcttgcgagaccgaaactaaagctgtnaaaacacctctggaagacccttcttccactagctccccttgcctgccgctctgcctgtcttctgcaccttttttcaccacctctgctttatccttcactccccccttcctctttcactctttcagctggttattttgaaaaggtttctaaattttctctaggctcatctgtgtgtttccttgtaaaatcctgtgataaattcctatgattttatgttaccttggcatccattttaatcttcctctaacacacccaaactccttnttgaaaaagcttaaattctctctgtgcttgagatgtaaatttgctaccctgttttctctaaaactcggtaagggcttcggccatgtgggacagataaattttaacttgttccatttacagaggcacagtttgaatccaactgtccttttaaactagtgagttttacctgnctcatggctaaagttttaaaatnaaagctataagatctttatttgtgtctgtctgtatttttatgtatatgtgtgtatacatgtctgtttgtatattgtctacggtaccaaattggcttataaataaatgagtactcataaattaagcaaataagcccaaatgcttttcaagttcacgtgacttagtaatcttttggtaaatgagactagtttaatattgttggtttaatgaaaacggctatgtcttctgagttatcagcaaaatatgcatgtatttaactttaaggttcttgcttttatgatacttgcctaacatacagtaatataaaaatggttaatagaaaatttaacttgagatgatggctagatttgtctaatgtctcatgaaattttccaaacataattgttaagaatgaataaattaaatagatgtaaatgggataaaagtttataaatgaacttttaataataattatgttttataatatgtttacttaaaaaggtttctcaaatctctttggtaactatacccttagagttttgctaagctaaattaaatgatggatattcattgaatatctagatcatttccaaataagatataatgctaagacattaattgctaaatatgagtttaagctcatatacttttggcttcttatttcagagaaacaaaagntatttggatctgttagtaaanatgtcctgttccacattgaaaaattgttctattagaaagcctatgtttctagaaattataaaatgtgtattcataaantgttggtacgtgactgacagttaaaaattgcttacttcctaggttttcactgaaaattagggttactaagagttaanattgtaattaatatatgtaattaaactactagagataagaaagacaattctgtatgcaagtgtataaggaaggtaagatgtatttttggtaaggaaggttaaaaagaaaagagaataattttgtatgagaaagaatcttgtgtggtaaatttttgtcctaaagtaaaatgactggttatttaagaaagaggaagtataggacaaagcagaaagtccaagcatgtcgtnaanggtctgagtaagtcgtgataaggttcgtgaaaagngaatttatgaaaggaattttgtgtgtgatcaagttggctataattagaaggaaattatttataagtctttctaaagattgagctttgatattaaaaatacactaatacaaaactnaaaaatttggtcccctatgttagaacaaggttttcttaaagtattgatttgctcttagtaaaattgcaagaggttttgatttttaattctgaaatctgtttctttaacagccatcttctaaactgcagacagtttctatttctgccacatttcttcctgagatccatttaatttccctagtttcaggttggaaatgcngctctccttctttctccccttgaaaaggtatatctttttgcttggctgggatgataactctctccttcaactttttcgtcagctcctgtaactttttctccggttctaactctgctgttatggcctgacgctgaaatgtttatcttgaaggcctagaaaagcaatgtttcctccagtataacttgattctgtactcttggcttttcttgatgtgtctgaattgttccatgtaaccaggaaacttcccatgctgttactaagagccatgtattcccctgctcaaggtactagttttcttgtttacattcctctataatatgggtacactcataaccttggacacactcttcctgtgtctgattaaattcaagtacccttttcatcaggtttgacttccaggttatctaaatgggcttcccataaggagaagcaatcacactgcaggaggtttttttttctttacctttttggtaactggcctaagaaacaaagattttacgttttatcaagataatttcctgtgntnnatgttgtctttattaggtttttgattacttaggaaaactgagctttaaaagggttaaggtttttacatccatgtaactttctgtattgcttttgaagtcttttgattatcactctggttaaatgaataactattatttnacagtgacctgtgattctgtttgatcaagtgttttgaaccttttgacatctttgacaggcttccccagaatcaaaatcctaaattaagtctttttgacctaaaattaactttgggattttccagttgggcccctggagagcctcaaagaattatctctcatcttgtagagatattaaatgattaggcttatttggtaaattatatgggaagcattgtcaaatgataagtgatgctagatcttctttcagttacatttatgtaggtatgttattgatatgtgttccaaaattatataaaattcntaaaaatctgatatgtcatgatatgtnntatcagtcataattctggttattatgttaaatnnttgtatgccacagaaataaccaaatttccttgtcaattgtgaactttcatcagatttttaaccatggctattctaagtttttgtcatccacagttattgttttgaattcttctctaaaagcatttgcaatcagtatagtccaaaattgctttaatcaagcaaaacaaaattaattacatgagattaagtaactgatgaagataattttatgacttttatttaaaatgttggttctttacttaaatntttttccagatttaaggaaattttctctcntaagctatctatagtttacagcaatttggtaaagtatcttttgtgaacaaaggtggaagcatttgctttttctccctacttgattcctccaaaattcggaaactattcgtgagtattcttattttatttacataagttcaataaaaatctgctctctctttataagcaggatacaattggaaacattggttatattaccaaggctttgactgaaatgtcatatttgagaatgtgcatagaatgcctggcttcaagggttcccagccttacagtgagtgagtaaaaattgtcacttcctggcaggcccaggaaccttaagactgtaggtaaaatctaaagtctgccttggtttggcttcctagcctcaagaggttttnaaatctgagattcctatgtgatcaatgtagagagaaaaagttatgtttctaaagaaaacgctataatacacctgttattagattgtagccctgtgcattgttttcgagttcttgttatctacctgtagactagactagatcctgaattcttctagnttcctccaatatttggctacaactaaatcccgatgaagtcccccggccctcttcccccaagcaagactagggatgctccggggacattcaggggatttccccttcttaaanctaaccaactaggngaattaaatattagaactggggacaaactagacccataggatactatggtctccttgtctcaaagnagttgatgctgtctcttcctttgtaaaagccacagngaagatagtnacggggccacccctcactgtctgcgttccatactctgttgaggctctcctcaattcacatcacaagcnnnntttgtaaaatttgtccacaatacaatactggaaaaccattncatgcctccatgggccacttcccattaccgaatggnccctttgaggtatggcaacaagattttatttagctccccgcctctcaagganaccagtatgtactagttatggtttgcatgttttcgcattgggttgaagccttccnctgtcgacaggccacagccatggcagtagctaaggccctattggaaaaattataccaacctggggagtctctcgagagcttcacagtgactgaggaactcattttacagggcaaattattcaaaacgtttgtaaaatttggcctatttatcaacatctccattgtgcttaccacccccagtcctctgggctggtggaacagaccaacggaataataaaagcccaattggcaaagatctgtgcggcgtttagcctgccatggcccgaggccctttctttagtcntccttaaccctggcatgctttcaacgncccctccccagagttctgaattcatccagatggtcggggtagccaaccagcctatgacggttcctaaatctctaccgatccccttccaactaggacccctcactggcagtcattgcttttcgcttgtcccatcggcccccatacacctcctgggaagggacttcttagaaacctgccaggcccatatttccttctcccaaaagggggaaataatgcttgagttatcctcaccaggagatttggccacagaaacggcttttacccaaattcccatctattcagttagccccaacgctacccaccctgctctccaagagctacctgagagtcttggggcacaatccaacaccgatgataacccctcagattatgaagatnatagttggggacactctcaaggatgcgatttacccggaggggttaaccctagtgaaggagctagattaggaaggtttctggggtcctggtttggactaggccctgcttggaatgaatatatggtcagaaacctttcccgcactgttaacagaattgcccgctccaccgcccgagccatcagggcacaacagaggtccctagactcccttgctcgtgtggtcctagacaaccacattgctttagactatcncctcgctgcacagggtggtgtttgtgctgtcgctaacacttgctgctgcacctgggtaaatacttccagtcaggttgaattgggaacatctaagatcctaaagctagccaaatctctgaaagggacaccttcagaaagcctcctggctggacttactgggttaaatttccaatttccagatattttcagctggcttcccctggtataggattccttctgcgttccgccctacaagtcttaatgatcctcctcatatttgggctaagcatttggctcctctttaaaattgttctagcctgttttaacagatgtctgcaagagacccccaccaggatcgtgctgacccaataccttgagactttaaactcactccagccggaaaccggaaccaacttaacccaagagactttggttcaaatttaacaggtacctgagtgcctctcataagtaaatggctctagttgctcagttggccactgccctgccactaggatccctgcgcgggactagatggacccggagcaggtagccaaccactctggcaccgtgatgggatgcaaccaacctantcaatcatcagtgctgtctgccgacaggttttgatnaaagggggggaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 40 99.0 Weakly correlated
2 ZNF394 21 99.0 Weakly correlated
3 ZNF766 19 43.0 Weakly correlated
4 ZNF610 14 28.9 Weakly correlated
5 ZNF558 12 99.0 Weakly correlated
6 ZNF2 11 99.0 Weakly correlated
7 ZFP37 10 99.0 Weakly correlated
8 ZFP69B 9 99.0 Weakly correlated
9 ZNF18 9 160.0 Weakly correlated
10 ZNF486 8 8.6 Weakly correlated
11 ZIM3 8 87.0 Weakly correlated
12 ZNF101 7 43.0 Weakly correlated
13 ZNF679 7 28.9 Weakly correlated
14 ZNF554 7 99.0 Weakly correlated
15 ZNF534 6 19.6 Weakly correlated
16 ZNF43 6 43.0 Weakly correlated
17 ZNF723 5 15.2 Weakly correlated
18 ZNF705B 5 28.9 Weakly correlated
19 ZNF680 5 28.9 Weakly correlated
20 ZNF320 5 28.9 Weakly correlated
21 ZNF324 5 99.0 Weakly correlated
22 ZNF589 5 28.9 Weakly correlated
23 ZNF547 5 74.0 Highly correlated
24 ZNF257 4 0.0 Weakly correlated
25 ZNF263 4 180.0 Weakly correlated
26 ZNF317 4 99.0 Weakly correlated
27 ZNF197 4 99.0 Weakly correlated
28 ZNF549 3 87.0 Weakly correlated
29 ZKSCAN8 3 160.0 Weakly correlated
30 ZKSCAN5 3 160.0 Weakly correlated
31 ZNF519 3 19.6 Weakly correlated
32 ZNF585B 3 99.0 Weakly correlated
33 ZNF705D 3 28.9 Weakly correlated
34 ZNF175 3 94.0 Weakly correlated
35 ZNF585A 2 99.0 Weakly correlated
36 ZNF584 2 99.0 Weakly correlated
37 ZNF778 2 74.0 Highly correlated
38 ZNF7 2 99.0 Weakly correlated
39 ZNF823 2 43.0 Weakly correlated
40 ZNF17 2 69.0 Moderately correlated
41 ZNF8 2 99.0 Weakly correlated
42 ZNF510 2 99.0 Weakly correlated
43 ZNF140 2 99.0 Weakly correlated
44 ZNF441 2 43.0 Weakly correlated
45 ZNF528 2 43.0 Weakly correlated
46 ZNF248 1 99.0 Weakly correlated
47 ZNF251 1 94.0 Weakly correlated
48 ZNF793 1 99.0 Weakly correlated
49 ZNF791 1 87.0 Weakly correlated
50 ZNF789 1 99.0 Weakly correlated
51 ZNF786 1 99.0 Weakly correlated
52 ZNF780A 1 43.0 Weakly correlated
53 ZNF264 1 99.0 Weakly correlated
54 ZNF273 1 28.9 Weakly correlated
55 ZNF736 1 43.0 Weakly correlated
56 ZNF726 1 28.9 Weakly correlated
57 ZNF274 1 99.0 Weakly correlated
58 ZNF707 1 74.0 Highly correlated
59 ZNF287 1 99.0 Weakly correlated
60 ZNF182 1 99.0 Weakly correlated
61 ZNF695 1 28.9 Weakly correlated
62 ZNF681 1 28.9 Weakly correlated
63 ZNF30 1 94.0 Weakly correlated
64 ZNF354C 1 99.0 Weakly correlated
65 ZNF641 1 99.0 Weakly correlated
66 ZKSCAN1 1 160.0 Weakly correlated
67 ZNF597 1 94.0 Weakly correlated
68 ZNF136 1 74.0 Highly correlated
69 ZNF425 1 94.0 Weakly correlated
70 ZNF429 1 28.9 Weakly correlated
71 ZNF440 1 28.9 Weakly correlated
72 ZNF563 1 28.9 Weakly correlated
73 ZNF479 1 6.4 Weakly correlated
74 ZNF485 1 94.0 Weakly correlated
75 ZNF506 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF43 5 43.0 Weakly correlated
2 ZNF534 5 19.6 Weakly correlated
3 ZNF101 3 43.0 Weakly correlated
4 ZIM3 3 87.0 Weakly correlated
5 ZKSCAN5 2 160.0 Weakly correlated
6 ZNF140 2 99.0 Weakly correlated
7 ZNF723 2 15.2 Weakly correlated
8 ZNF680 2 28.9 Weakly correlated
9 ZNF510 2 99.0 Weakly correlated
10 ZNF485 1 94.0 Weakly correlated
11 ZNF264 1 99.0 Weakly correlated
12 ZNF197 1 99.0 Weakly correlated
13 ZNF175 1 94.0 Weakly correlated
14 ZNF589 1 28.9 Weakly correlated
15 ZNF440 1 28.9 Weakly correlated
16 ZNF780A 1 43.0 Weakly correlated
17 ZNF7 1 99.0 Weakly correlated
18 ZNF584 1 99.0 Weakly correlated
19 ZNF558 1 99.0 Weakly correlated
20 ZNF320 1 28.9 Weakly correlated
21 ZNF793 1 99.0 Weakly correlated
22 ZNF695 1 28.9 Weakly correlated
23 ZNF610 1 28.9 Weakly correlated
24 ZNF317 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats