ZRdb KZFP & Repeats
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SINE_MAMSINE1

  • Name
    MAMSINE1
  • Repbase
    MamSINE1
  • Type
    SINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000996
Description :

MamSINE1 is a modest copy number SINE in mammals that captured a tRNA-Ile at the 5' end, and that remains remarkably similar over the fulllength of the tRNA.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gtctgtggctggttagctcagttggttagagcacggtgctaatgaggccaaggtcacgggttcgatccccgtgtgggccagttagctttgctctgttccatggccacagactgcacccctaaccccagccagccgtctcgcaaatgcgtgccgttggtcacaagggggaccggcagagagtgtggatggntcagcgcaaatccatcnccactactggaaaaacaactcaaagcacatgtcctactgatagtgggtcagtagcgtcatcttcgtatacgaaggacagcaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 299 99.0 Highly correlated
2 ZNF766 82 43.0 Weakly correlated
3 ZNF394 73 99.0 Highly correlated
4 ZNF263 68 180.0 Weakly correlated
5 ZFP37 65 99.0 Highly correlated
6 ZNF317 57 99.0 Highly correlated
7 ZNF2 53 99.0 Highly correlated
8 ZNF18 34 160.0 Weakly correlated
9 ZFP69B 33 99.0 Highly correlated
10 ZNF175 33 94.0 Moderately correlated
11 ZNF554 33 99.0 Highly correlated
12 ZNF589 32 28.9 Weakly correlated
13 ZKSCAN1 31 160.0 Weakly correlated
14 ZIM3 29 87.0 Moderately correlated
15 ZKSCAN8 27 160.0 Weakly correlated
16 ZNF101 27 43.0 Weakly correlated
17 ZNF558 26 99.0 Highly correlated
18 ZNF584 23 99.0 Highly correlated
19 ZNF324 22 99.0 Highly correlated
20 ZNF479 19 6.4 Weakly correlated
21 ZNF701 18 28.9 Weakly correlated
22 ZNF723 18 15.2 Weakly correlated
23 ZNF680 16 28.9 Weakly correlated
24 ZNF197 15 99.0 Highly correlated
25 ZNF534 15 19.6 Weakly correlated
26 ZNF610 14 28.9 Weakly correlated
27 ZNF597 12 94.0 Moderately correlated
28 ZNF679 12 28.9 Weakly correlated
29 ZFP57 9 87.0 Moderately correlated
30 ZNF133 9 99.0 Highly correlated
31 ZNF331 9 94.0 Moderately correlated
32 ZNF92 9 28.9 Weakly correlated
33 ZNF486 7 8.6 Weakly correlated
34 ZNF528 7 43.0 Weakly correlated
35 ZNF792 7 94.0 Moderately correlated
36 ZNF793 7 99.0 Highly correlated
37 ZNF705B 6 28.9 Weakly correlated
38 ZNF251 5 94.0 Moderately correlated
39 ZNF28 5 28.9 Weakly correlated
40 ZNF705D 5 28.9 Weakly correlated
41 ZNF75D 5 94.0 Moderately correlated
42 ZNF786 5 99.0 Highly correlated
43 ZNF429 4 28.9 Weakly correlated
44 ZNF547 4 74.0 Weakly correlated
45 ZNF549 4 87.0 Moderately correlated
46 ZNF140 3 99.0 Highly correlated
47 ZNF182 3 99.0 Highly correlated
48 ZNF264 3 99.0 Highly correlated
49 ZNF273 3 28.9 Weakly correlated
50 ZNF282 3 319.0 Weakly correlated
51 ZNF320 3 28.9 Weakly correlated
52 ZNF506 3 28.9 Weakly correlated
53 ZNF519 3 19.6 Weakly correlated
54 ZNF585B 3 99.0 Highly correlated
55 ZNF695 3 28.9 Weakly correlated
56 ZNF778 3 74.0 Weakly correlated
57 ZFP28 2 99.0 Highly correlated
58 ZNF141 2 43.0 Weakly correlated
59 ZNF189 2 99.0 Highly correlated
60 ZNF257 2 0.0 Weakly correlated
61 ZNF26 2 99.0 Highly correlated
62 ZNF274 2 99.0 Highly correlated
63 ZNF30 2 94.0 Moderately correlated
64 ZNF333 2 99.0 Highly correlated
65 ZNF419 2 28.9 Weakly correlated
66 ZNF440 2 28.9 Weakly correlated
67 ZNF468 2 28.9 Weakly correlated
68 ZNF485 2 94.0 Moderately correlated
69 ZNF490 2 43.0 Weakly correlated
70 ZNF559 2 74.0 Weakly correlated
71 ZNF563 2 28.9 Weakly correlated
72 ZNF573 2 94.0 Moderately correlated
73 ZNF585A 2 99.0 Highly correlated
74 ZNF682 2 28.9 Weakly correlated
75 ZNF707 2 74.0 Weakly correlated
76 ZNF716 2 19.6 Weakly correlated
77 ZNF735 2 28.9 Weakly correlated
78 ZNF845 2 28.9 Weakly correlated
79 ZNF93 2 8.6 Weakly correlated
80 RBAK 1 99.0 Highly correlated
81 ZNF100 1 28.9 Weakly correlated
82 ZNF12 1 99.0 Highly correlated
83 ZNF202 1 160.0 Weakly correlated
84 ZNF248 1 99.0 Highly correlated
85 ZNF267 1 43.0 Weakly correlated
86 ZNF284 1 43.0 Weakly correlated
87 ZNF350 1 99.0 Highly correlated
88 ZNF354A 1 99.0 Highly correlated
89 ZNF41 1 99.0 Highly correlated
90 ZNF441 1 43.0 Weakly correlated
91 ZNF471 1 94.0 Moderately correlated
92 ZNF510 1 99.0 Highly correlated
93 ZNF530 1 28.9 Weakly correlated
94 ZNF561 1 43.0 Weakly correlated
95 ZNF568 1 99.0 Highly correlated
96 ZNF586 1 43.0 Weakly correlated
97 ZNF641 1 99.0 Highly correlated
98 ZNF671 1 94.0 Moderately correlated
99 ZNF674 1 99.0 Highly correlated
100 ZNF675 1 8.6 Weakly correlated
101 ZNF749 1 28.9 Weakly correlated
102 ZNF776 1 43.0 Weakly correlated
103 ZNF808 1 19.6 Weakly correlated
104 ZNF816 1 28.9 Weakly correlated
105 ZNF8 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF554 13 99.0 Highly correlated
2 ZFP37 9 99.0 Highly correlated
3 ZNF382 9 99.0 Highly correlated
4 ZNF263 9 180.0 Weakly correlated
5 ZNF479 9 6.4 Weakly correlated
6 ZIM3 9 87.0 Moderately correlated
7 ZNF317 7 99.0 Highly correlated
8 ZNF680 6 28.9 Weakly correlated
9 ZNF133 4 99.0 Highly correlated
10 ZNF701 4 28.9 Weakly correlated
11 ZNF723 4 15.2 Weakly correlated
12 ZNF101 4 43.0 Weakly correlated
13 ZNF589 3 28.9 Weakly correlated
14 ZNF584 3 99.0 Highly correlated
15 ZNF175 3 94.0 Moderately correlated
16 ZNF766 3 43.0 Weakly correlated
17 ZNF534 2 19.6 Weakly correlated
18 ZNF75D 2 94.0 Moderately correlated
19 ZFP57 2 87.0 Moderately correlated
20 ZNF2 2 99.0 Highly correlated
21 ZNF324 2 99.0 Highly correlated
22 ZNF549 2 87.0 Moderately correlated
23 ZNF440 2 28.9 Weakly correlated
24 ZNF558 1 99.0 Highly correlated
25 ZNF695 1 28.9 Weakly correlated
26 ZFP69B 1 99.0 Highly correlated
27 ZNF141 1 43.0 Weakly correlated
28 ZNF793 1 99.0 Highly correlated
29 ZNF792 1 94.0 Moderately correlated
30 ZNF189 1 99.0 Highly correlated
31 ZNF333 1 99.0 Highly correlated
32 ZNF197 1 99.0 Highly correlated
33 ZNF749 1 28.9 Weakly correlated
34 ZNF485 1 94.0 Moderately correlated
35 ZNF585A 1 99.0 Highly correlated
36 ZNF320 1 28.9 Weakly correlated
37 ZNF641 1 99.0 Highly correlated
38 ZNF468 1 28.9 Weakly correlated
39 ZNF705D 1 28.9 Weakly correlated
40 ZNF257 1 0.0 Weakly correlated
41 ZNF251 1 94.0 Moderately correlated
42 ZNF786 1 99.0 Highly correlated
43 ZNF282 1 319.0 Weakly correlated
44 ZNF679 1 28.9 Weakly correlated
45 ZNF610 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF554 99.0 Highly correlated