ZRdb KZFP & Repeats
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LINE_MAMRTE1

  • Name
    MAMRTE1
  • Repbase
    X11_LINE
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001149
Description :

MamRTE1 is an RTE LINE possibly ancestral to Plat_RTE1 (reconstructedfrom platypus). Subfamilies clearly existed, but have not been exploredyet. MamSINE1, a chimera of a tRNA and 5' UTR segment from MamRTE1, wasdependent on this LINE. Crocodilians harbor a related element, butMamRTE1 may represent a mammalian-specific subfamily.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gtaaantgcaaagaccccagcgatttncacggcggangtgagngcctcactcaacaacggcgtanaaagcggangagggcacagcagtgtctgctgctgaggagggcgcacagaganattctgttccgcggccacagactgnacccctaaccccggccagccgtctcgcaatgcgtgccgctggtcacggggggaccgggcgagagagtgtggatggctcagcgcaacccatcaccactactggaaaaacaactcaagcgcatgtcctgctgacggtgggaaaacctaaacaaaagtcctntgcgagtaggcggcccaggatattggtcgcttagtcgctgangaggcagcagcaccgttcggcagcgncctgggtgtctgagcagccctgtttaggancgcgctgctcactccgaatggggaagggnctagaaaaggtgccctaaacgttgcctgcctcgccaaantcaaanctggctcaccagattatcgcgtctggtgggttttantcttgcggtgcaaaancaaatagaaaactaccnannacaaagaaaataaccattgcgtcatggaacatcaggacgctatgcgatgacgagaacagcagtcgtccagaaagaagaacggcactcgtcgcacgtgaactgtccagatacggagtcgacatcgccgcactgagcgaaaccagacttcctgatgaaggacagctcacggagacaggtgccggntacgccttcttctggagaggtcttccctcttcagagcgacggctctcaggcgtcagctttgcaatcagacagtcacttgtctcaagnctcccaaatttgcccagaggcatnagtgaccgtctgatgaccctacgcctacntctgaaacaaaagcgctntgccaccgtcatcagcgcatatgcccccaccatgacgaataccgatgaggagaaagaaagattctacaaggatctggacagactcatcgcagcggtaccaacatctgacaagctgatcgtcacgggagatttcaacgcacgtgtcggcagcgatgccgaaacgtggagaaaagtcatcggaccncacgggattggaaagctnaacagcaatggtctactcctgctcagcgaatgtgccaagcatcagctcgtaatcaccaacaccatcttccgcctaccgaataagagaaagacatcatggatgcacccaaggtctaagcagtggcatctcattgattatatcatcgttcgacagcgggacctgaaggatgtttagattactgcagctatgcgtggcgccgagtgctggaccgaccatcgcctgatacgctccaaactctcgctagcgatacaaccaatgtatcncaaagtggcatccaaaccatccagacggctcaacgtcaagctcctggagaatgaagacgcctgcaaggagctntatgacaacatcncagcagccctnttggancaaggaaccccagctgcaagtaccaacgtgaacagcgaatgggcgnttctccgagatgccgtctnccaggcagccatcagcgctgtgggcgctgtnaaacgacgccaccagaactggtttgatgagaatgactcagagattaagaagctacttgcagcaaagcaagnaatgcnttgtcaacaccttgcagctcctcatgatccagacgaaagagacgcttacagaagcctgtatcgtgacatgcagatcaagttaagaaacgcgnatgaccagtggtgggatgccaaggctgaagagatccaggactatgcagaccgncaccaaaccaaggacttctatgcgnccctaaagatgttatatggnccaacacacgccatcacggcaccgctgaggagtgnagatggctccgccctcatcacagacgggaagggaatcctacggagatggcagcaacacttcaacgatcttctnaacacgccttctaccatcgaggatgaagtcctgcgaagcgtagagaacctgccaagatgcgataacntggccttcgctccaacttttgaagaagtcancaccgctgtcagagccatgaagaatggtaaagctctcggacctgatggcatacctgctgagattttcaagcaggaaggggagacgctgcttagacgtctgcataggcttttcttcagcatatggagtaccgaggaaatgccgcaggatttcaaagatgccactatcatcaccatcttcaagaagaaaggcgagaaagctgactgcggcaactatcgcggcatctcnctgctctccattgctggcaagatcctggccagagtccttctggatcggctactgaacaacatcgtcaaccgtgcgctcccggaatcgcaatgtggctttaggccgcagcgcggtanagcggacgtgatctttgcngcatgtcagatacaggaaaagcgcagggaacaacatcaagacctctgcactgtattcatcgaccttacaaaagcatttgacgccatcagtagacctgggctctggcagctactaagcaagtttggctgccctgagaagttcaccaagatcctaaggctactccatgatggtatggccggtcgcgtcagagttgacggcgtcctgtccgacccattccccatcaccaatggagtgaagcaggattgcgtaataggtccagtcttattcaatctattttatgcagccatgctcgaggatgcaacaagggacctggaagctggtgtcagaatacgcttccggtcctctgggaaactcttccaactcaacaggctacgagcatcatcgaaagtccttgagacagtcatccaggaactgctgtatgccgatgactgtgctcttgaagtacacgcgcaagaagacatgcagntgatcatggaccgctttgcagagtcagcacagcgctacggactgacgataagcctgaagaagaccgaggtcatgtaccagcctgcaccagggaaaccctacacgcagccaaagattttcatcggcaatacagagctgaaagctgtcaccgaattctgctacctaggcagcacgctgtccaatgatgcactgatngacaaagaagtagaaaaccgaatcaagaaggccagcatgtcctttgggaggctggcagacagagtgtggcgccaacgtggcatcaagctccagaccaaactaaaggtctacagagcgatagcgntgtccaaccttctntacggctgtgagacctggacctgccacagacgtcacatccggcttcttgagcagtttcatcagcgtcacctacgagccatacttaacattaaatggcaagacaggatcaccaacaacgaggtcctggaacgcagccagtctaccagcactgaagcgatgctcgccgcaacgcagctccgctgggctggacatgtgcggagaatggatgacagcaggatacccaagcagctgctgtacggtgagctgaagtggggcaaccgcaagcagggagggcagaagaaacgctttaaggatncactgaagcacagcttcaaacaatgcggcatagctgtggactgctgggaaacaacagcagcagacagaccagcctggcatgcagcaatcaggaacggggtggctctttttgagcaaaggcttcgggccgaccgcgagtctaagaggcagagtcgcaaacagcgacaggctctgcaaatagcggctgcagccgcaaatcaaaggacagtcttcacgtgtgcacagtgtggaaaggactgttggtcacgcatcggtcttttcagccacacccgcacacatagatagcaatcaccgtcagtagcgtcatcttcgaatacgaaggacaacgatatatat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 577 99.0 Highly correlated
2 ZNF766 199 43.0 Weakly correlated
3 ZNF263 169 180.0 Weakly correlated
4 ZNF394 156 99.0 Highly correlated
5 ZFP37 132 99.0 Highly correlated
6 ZNF2 118 99.0 Highly correlated
7 ZKSCAN1 109 160.0 Weakly correlated
8 ZNF317 100 99.0 Highly correlated
9 ZFP69B 90 99.0 Highly correlated
10 ZNF589 86 28.9 Weakly correlated
11 ZIM3 84 87.0 Moderately correlated
12 ZNF175 73 94.0 Moderately correlated
13 ZNF18 70 160.0 Weakly correlated
14 ZNF324 70 99.0 Highly correlated
15 ZKSCAN8 68 160.0 Weakly correlated
16 ZNF101 65 43.0 Weakly correlated
17 ZNF554 65 99.0 Highly correlated
18 ZNF701 64 28.9 Weakly correlated
19 ZNF584 60 99.0 Highly correlated
20 ZNF558 53 99.0 Highly correlated
21 ZNF723 50 15.2 Weakly correlated
22 ZNF197 49 99.0 Highly correlated
23 ZNF680 48 28.9 Weakly correlated
24 ZNF610 41 28.9 Weakly correlated
25 ZFP57 35 87.0 Moderately correlated
26 ZNF479 30 6.4 Weakly correlated
27 ZNF679 30 28.9 Weakly correlated
28 ZNF92 29 28.9 Weakly correlated
29 ZNF534 28 19.6 Weakly correlated
30 ZNF528 27 43.0 Weakly correlated
31 ZNF257 24 0.0 Weakly correlated
32 ZNF792 24 94.0 Moderately correlated
33 ZNF597 23 94.0 Moderately correlated
34 ZNF793 17 99.0 Highly correlated
35 ZNF251 16 94.0 Moderately correlated
36 ZNF75D 16 94.0 Moderately correlated
37 ZNF490 14 43.0 Weakly correlated
38 ZNF705B 14 28.9 Weakly correlated
39 ZNF778 14 74.0 Weakly correlated
40 ZNF486 13 8.6 Weakly correlated
41 ZNF547 12 74.0 Weakly correlated
42 ZNF705D 12 28.9 Weakly correlated
43 ZNF264 11 99.0 Highly correlated
44 ZNF274 11 99.0 Highly correlated
45 ZNF133 10 99.0 Highly correlated
46 ZNF695 10 28.9 Weakly correlated
47 ZNF282 8 319.0 Weakly correlated
48 ZNF30 8 94.0 Moderately correlated
49 ZNF549 8 87.0 Moderately correlated
50 ZNF8 8 99.0 Highly correlated
51 ZNF140 7 99.0 Highly correlated
52 ZNF485 7 94.0 Moderately correlated
53 ZNF519 7 19.6 Weakly correlated
54 ZNF563 7 28.9 Weakly correlated
55 ZNF707 7 74.0 Weakly correlated
56 ZNF93 7 8.6 Weakly correlated
57 ZFP28 6 99.0 Highly correlated
58 ZNF425 6 94.0 Moderately correlated
59 ZNF429 6 28.9 Weakly correlated
60 ZNF440 6 28.9 Weakly correlated
61 ZNF585B 6 99.0 Highly correlated
62 ZNF735 6 28.9 Weakly correlated
63 ZNF202 5 160.0 Weakly correlated
64 ZNF230 5 28.9 Weakly correlated
65 ZNF41 5 99.0 Highly correlated
66 ZNF420 5 94.0 Moderately correlated
67 ZNF44 5 43.0 Weakly correlated
68 ZNF641 5 99.0 Highly correlated
69 ZNF320 4 28.9 Weakly correlated
70 ZNF331 4 94.0 Moderately correlated
71 ZNF33A 4 99.0 Highly correlated
72 ZNF436 4 180.0 Weakly correlated
73 ZNF506 4 28.9 Weakly correlated
74 ZNF510 4 99.0 Highly correlated
75 ZNF786 4 99.0 Highly correlated
76 ZNF816 4 28.9 Weakly correlated
77 ZNF91 4 6.0 Weakly correlated
78 ZNF141 3 43.0 Weakly correlated
79 ZNF182 3 99.0 Highly correlated
80 ZNF189 3 99.0 Highly correlated
81 ZNF302 3 43.0 Weakly correlated
82 ZNF441 3 43.0 Weakly correlated
83 ZNF483 3 99.0 Highly correlated
84 ZNF605 3 99.0 Highly correlated
85 ZNF674 3 99.0 Highly correlated
86 ZNF682 3 28.9 Weakly correlated
87 ZNF716 3 19.6 Weakly correlated
88 ZNF75A 3 94.0 Moderately correlated
89 RBAK 2 99.0 Highly correlated
90 ZFP69 2 99.0 Highly correlated
91 ZKSCAN5 2 160.0 Weakly correlated
92 ZNF114 2 28.9 Weakly correlated
93 ZNF12 2 99.0 Highly correlated
94 ZNF136 2 74.0 Weakly correlated
95 ZNF248 2 99.0 Highly correlated
96 ZNF267 2 43.0 Weakly correlated
97 ZNF273 2 28.9 Weakly correlated
98 ZNF343 2 74.0 Weakly correlated
99 ZNF445 2 99.0 Highly correlated
100 ZNF471 2 94.0 Moderately correlated
101 ZNF561 2 43.0 Weakly correlated
102 ZNF567 2 99.0 Highly correlated
103 ZNF573 2 94.0 Moderately correlated
104 ZNF585A 2 99.0 Highly correlated
105 ZNF587 2 28.9 Weakly correlated
106 ZNF595 2 43.0 Weakly correlated
107 ZNF765 2 8.6 Weakly correlated
108 ZNF780B 2 74.0 Weakly correlated
109 ZNF84 2 99.0 Highly correlated
110 ZNF85 2 28.9 Weakly correlated
111 PRDM9 1 0.0 Weakly correlated
112 ZFP90 1 99.0 Highly correlated
113 ZKSCAN2 1 180.0 Weakly correlated
114 ZKSCAN3 1 99.0 Highly correlated
115 ZNF100 1 28.9 Weakly correlated
116 ZNF124 1 43.0 Weakly correlated
117 ZNF17 1 69.0 Weakly correlated
118 ZNF211 1 94.0 Moderately correlated
119 ZNF214 1 99.0 Highly correlated
120 ZNF222 1 43.0 Weakly correlated
121 ZNF224 1 69.0 Weakly correlated
122 ZNF26 1 99.0 Highly correlated
123 ZNF283 1 99.0 Highly correlated
124 ZNF284 1 43.0 Weakly correlated
125 ZNF28 1 28.9 Weakly correlated
126 ZNF304 1 99.0 Highly correlated
127 ZNF333 1 99.0 Highly correlated
128 ZNF337 1 43.0 Weakly correlated
129 ZNF350 1 99.0 Highly correlated
130 ZNF354A 1 99.0 Highly correlated
131 ZNF354C 1 99.0 Highly correlated
132 ZNF432 1 99.0 Highly correlated
133 ZNF433 1 43.0 Weakly correlated
134 ZNF468 1 28.9 Weakly correlated
135 ZNF529 1 99.0 Highly correlated
136 ZNF540 1 87.0 Moderately correlated
137 ZNF548 1 94.0 Moderately correlated
138 ZNF557 1 15.2 Weakly correlated
139 ZNF578 1 15.2 Weakly correlated
140 ZNF596 1 94.0 Moderately correlated
141 ZNF611 1 19.6 Weakly correlated
142 ZNF613 1 99.0 Highly correlated
143 ZNF614 1 99.0 Highly correlated
144 ZNF616 1 43.0 Weakly correlated
145 ZNF627 1 74.0 Weakly correlated
146 ZNF671 1 94.0 Moderately correlated
147 ZNF675 1 8.6 Weakly correlated
148 ZNF677 1 99.0 Highly correlated
149 ZNF681 1 28.9 Weakly correlated
150 ZNF77 1 87.0 Moderately correlated
151 ZNF791 1 87.0 Moderately correlated
152 ZNF799 1 43.0 Weakly correlated
153 ZNF7 1 99.0 Highly correlated
154 ZNF808 1 19.6 Weakly correlated
155 ZNF823 1 43.0 Weakly correlated
156 ZNF845 1 28.9 Weakly correlated
157 ZNF860 1 0.0 Weakly correlated
158 ZNF879 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 23 87.0 Moderately correlated
2 ZNF723 21 15.2 Weakly correlated
3 ZNF382 20 99.0 Highly correlated
4 ZNF263 18 180.0 Weakly correlated
5 ZNF766 16 43.0 Weakly correlated
6 ZNF701 13 28.9 Weakly correlated
7 ZFP37 13 99.0 Highly correlated
8 ZNF479 12 6.4 Weakly correlated
9 ZNF317 10 99.0 Highly correlated
10 ZNF554 10 99.0 Highly correlated
11 ZNF589 9 28.9 Weakly correlated
12 ZNF680 8 28.9 Weakly correlated
13 ZNF2 7 99.0 Highly correlated
14 ZNF534 7 19.6 Weakly correlated
15 ZNF584 6 99.0 Highly correlated
16 ZKSCAN1 6 160.0 Weakly correlated
17 ZNF610 6 28.9 Weakly correlated
18 ZFP57 6 87.0 Moderately correlated
19 ZNF793 5 99.0 Highly correlated
20 ZNF197 5 99.0 Highly correlated
21 ZNF75D 4 94.0 Moderately correlated
22 ZNF597 4 94.0 Moderately correlated
23 ZNF18 4 160.0 Weakly correlated
24 ZKSCAN8 4 160.0 Weakly correlated
25 ZNF175 4 94.0 Moderately correlated
26 ZNF92 3 28.9 Weakly correlated
27 ZNF679 3 28.9 Weakly correlated
28 ZNF257 3 0.0 Weakly correlated
29 ZNF558 3 99.0 Highly correlated
30 ZNF264 2 99.0 Highly correlated
31 ZFP69B 2 99.0 Highly correlated
32 ZNF133 2 99.0 Highly correlated
33 ZNF585A 2 99.0 Highly correlated
34 ZNF485 2 94.0 Moderately correlated
35 ZNF483 2 99.0 Highly correlated
36 ZNF707 2 74.0 Weakly correlated
37 ZNF587 2 28.9 Weakly correlated
38 ZNF519 2 19.6 Weakly correlated
39 ZNF490 2 43.0 Weakly correlated
40 ZNF585B 2 99.0 Highly correlated
41 ZNF324 2 99.0 Highly correlated
42 ZNF735 1 28.9 Weakly correlated
43 ZNF671 1 94.0 Moderately correlated
44 ZFP69 1 99.0 Highly correlated
45 ZKSCAN5 1 160.0 Weakly correlated
46 ZNF282 1 319.0 Weakly correlated
47 ZNF274 1 99.0 Highly correlated
48 ZNF101 1 43.0 Weakly correlated
49 ZNF433 1 43.0 Weakly correlated
50 ZNF506 1 28.9 Weakly correlated
51 ZNF343 1 74.0 Weakly correlated
52 ZNF486 1 8.6 Weakly correlated
53 ZNF44 1 43.0 Weakly correlated
54 ZNF420 1 94.0 Moderately correlated
55 ZNF780B 1 74.0 Weakly correlated
56 ZFP28 1 99.0 Highly correlated
57 ZNF141 1 43.0 Weakly correlated
58 ZNF605 1 99.0 Highly correlated
59 ZNF320 1 28.9 Weakly correlated
60 ZNF189 1 99.0 Highly correlated
61 ZNF528 1 43.0 Weakly correlated
62 ZNF471 1 94.0 Moderately correlated
63 ZNF440 1 28.9 Weakly correlated
64 ZNF441 1 43.0 Weakly correlated
65 ZNF248 1 99.0 Highly correlated
66 ZNF7 1 99.0 Highly correlated
67 ZNF792 1 94.0 Moderately correlated
68 ZNF674 1 99.0 Highly correlated
69 ZNF283 1 99.0 Highly correlated
70 ZNF816 1 28.9 Weakly correlated
71 ZNF41 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Highly correlated
2 ZFP57 87.0 Moderately correlated
3 ZKSCAN1 160.0 Weakly correlated
4 ZNF2 99.0 Highly correlated
5 ZNF317 99.0 Highly correlated
6 ZNF554 99.0 Highly correlated
7 ZNF584 99.0 Highly correlated
8 ZNF589 28.9 Weakly correlated
9 ZNF610 28.9 Weakly correlated
10 ZNF680 28.9 Weakly correlated
11 ZNF701 28.9 Weakly correlated