ZRdb KZFP & Repeats
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LTR_MAMREP605

  • Name
    MAMREP605
  • Repbase
    MamRep605
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000995
Description :

The termini of MamRep605 are probably incomplete, but it is tentativelyclassified as an LTR based on perceived termini. The orientation ischosen based on presence of AATAAA.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgtcagtacttgggggctacagtgaggcgtcccccaagaacttggaaataagggaaataagattgccctctgagagttaaactataaaatcaacacataatggatcagagcagagatatgcaaagtcaccttaaagagacagaatggctcccaggccagcaagacttgactgtaacctgattgaatgtattaacatatctaaagaaagaatgtgtcaatcagaagggaggttggtcagccatggaagcatagaaaaaggagagtcacagaggcaaacgttggcagtgcccatccaagcactgtccaggggagagggagccttggccaacggacttcgagtattccggtcccattggcaaggccatccctactgtggagatggatgcatcaggctatcttagcctgatgccattaaacattcgaatcatntaactaactccccttgttctgattccatgctcaccaagcaaccttctgattataatttggcttcccatgtaggtctgcctacagggagagaatgcgctggtcatgcngacncgagtattctggtccncgtgacagttatatttctcattgtaaattaataaattggcattctggttttatacatcagtctcgtgagcttggttaatgtgagtccgcccctgagagatggatccgctctcggtgtgctgacaaaatcaggtttctgagcctgcaaggctgagggccagaccctggaccgtggtaaattcaccaaggtaatgccaccctgtgaggcctcttgggagacagccagccggcctttcccctggtgacactccantcnccacgatgttgccattggcattttaaattcttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 175 99.0 Highly correlated
2 ZNF766 54 43.0 Weakly correlated
3 ZNF92 48 28.9 Weakly correlated
4 ZNF394 42 99.0 Highly correlated
5 ZNF263 42 180.0 Weakly correlated
6 ZNF317 38 99.0 Highly correlated
7 ZNF135 38 94.0 Moderately correlated
8 ZNF680 28 28.9 Weakly correlated
9 ZFP37 24 99.0 Highly correlated
10 ZIM3 24 87.0 Moderately correlated
11 ZNF679 21 28.9 Weakly correlated
12 ZKSCAN1 21 160.0 Weakly correlated
13 ZNF175 20 94.0 Moderately correlated
14 ZNF534 18 19.6 Weakly correlated
15 ZNF101 17 43.0 Weakly correlated
16 ZNF554 16 99.0 Highly correlated
17 ZNF479 15 6.4 Weakly correlated
18 ZNF723 15 15.2 Weakly correlated
19 ZNF589 15 28.9 Weakly correlated
20 ZNF2 14 99.0 Highly correlated
21 ZNF324 13 99.0 Highly correlated
22 ZNF18 13 160.0 Weakly correlated
23 ZKSCAN8 13 160.0 Weakly correlated
24 ZNF558 13 99.0 Highly correlated
25 ZNF584 13 99.0 Highly correlated
26 ZNF701 11 28.9 Weakly correlated
27 ZNF197 10 99.0 Highly correlated
28 ZNF528 10 43.0 Weakly correlated
29 ZNF140 8 99.0 Highly correlated
30 ZFP69B 8 99.0 Highly correlated
31 ZNF485 8 94.0 Moderately correlated
32 ZFP57 7 87.0 Moderately correlated
33 ZNF75D 7 94.0 Moderately correlated
34 ZNF610 6 28.9 Weakly correlated
35 ZNF251 6 94.0 Moderately correlated
36 ZNF597 5 94.0 Moderately correlated
37 ZNF705B 5 28.9 Weakly correlated
38 ZNF425 5 94.0 Moderately correlated
39 ZNF705D 5 28.9 Weakly correlated
40 ZNF793 4 99.0 Highly correlated
41 ZNF274 4 99.0 Highly correlated
42 ZNF563 3 28.9 Weakly correlated
43 ZNF549 3 87.0 Moderately correlated
44 ZNF547 3 74.0 Weakly correlated
45 ZNF133 3 99.0 Highly correlated
46 ZNF490 3 43.0 Weakly correlated
47 ZNF792 3 94.0 Moderately correlated
48 ZNF257 3 0.0 Weakly correlated
49 ZNF273 3 28.9 Weakly correlated
50 ZNF28 3 28.9 Weakly correlated
51 ZNF141 3 43.0 Weakly correlated
52 ZNF585A 2 99.0 Highly correlated
53 ZNF707 2 74.0 Weakly correlated
54 ZNF264 2 99.0 Highly correlated
55 ZNF284 2 43.0 Weakly correlated
56 ZNF671 2 94.0 Moderately correlated
57 ZNF736 2 43.0 Weakly correlated
58 ZNF778 2 74.0 Weakly correlated
59 ZNF429 2 28.9 Weakly correlated
60 ZNF136 2 74.0 Weakly correlated
61 ZNF454 2 99.0 Highly correlated
62 ZNF510 2 99.0 Highly correlated
63 ZNF486 2 8.6 Weakly correlated
64 ZNF77 1 87.0 Moderately correlated
65 ZNF780A 1 43.0 Weakly correlated
66 ZFP30 1 99.0 Highly correlated
67 ZNF182 1 99.0 Highly correlated
68 ZNF765 1 8.6 Weakly correlated
69 ZNF248 1 99.0 Highly correlated
70 ZNF786 1 99.0 Highly correlated
71 ZNF250 1 99.0 Highly correlated
72 ZNF81 1 99.0 Highly correlated
73 ZNF850 1 28.9 Weakly correlated
74 ZNF716 1 19.6 Weakly correlated
75 ZNF667 1 99.0 Highly correlated
76 ZNF613 1 99.0 Highly correlated
77 ZNF320 1 28.9 Weakly correlated
78 ZNF331 1 94.0 Moderately correlated
79 ZNF337 1 43.0 Weakly correlated
80 ZNF347 1 43.0 Weakly correlated
81 ZNF573 1 94.0 Moderately correlated
82 ZFP90 1 99.0 Highly correlated
83 ZFP69 1 99.0 Highly correlated
84 ZNF440 1 28.9 Weakly correlated
85 ZNF441 1 43.0 Weakly correlated
86 ZNF44 1 43.0 Weakly correlated
87 ZNF506 1 28.9 Weakly correlated
88 ZNF471 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 8 19.6 Weakly correlated
2 ZFP37 7 99.0 Highly correlated
3 ZNF479 7 6.4 Weakly correlated
4 ZIM3 6 87.0 Moderately correlated
5 ZNF18 6 160.0 Weakly correlated
6 ZNF723 6 15.2 Weakly correlated
7 ZNF263 5 180.0 Weakly correlated
8 ZNF75D 4 94.0 Moderately correlated
9 ZNF701 4 28.9 Weakly correlated
10 ZNF197 3 99.0 Highly correlated
11 ZNF382 3 99.0 Highly correlated
12 ZNF554 3 99.0 Highly correlated
13 ZNF101 3 43.0 Weakly correlated
14 ZNF528 3 43.0 Weakly correlated
15 ZNF679 2 28.9 Weakly correlated
16 ZNF175 2 94.0 Moderately correlated
17 ZNF136 2 74.0 Weakly correlated
18 ZKSCAN8 2 160.0 Weakly correlated
19 ZNF317 2 99.0 Highly correlated
20 ZNF793 2 99.0 Highly correlated
21 ZNF766 2 43.0 Weakly correlated
22 ZNF135 2 94.0 Moderately correlated
23 ZNF585A 2 99.0 Highly correlated
24 ZNF141 2 43.0 Weakly correlated
25 ZNF680 2 28.9 Weakly correlated
26 ZNF597 1 94.0 Moderately correlated
27 ZNF429 1 28.9 Weakly correlated
28 ZNF28 1 28.9 Weakly correlated
29 ZNF264 1 99.0 Highly correlated
30 ZKSCAN1 1 160.0 Weakly correlated
31 ZNF716 1 19.6 Weakly correlated
32 ZNF707 1 74.0 Weakly correlated
33 ZNF506 1 28.9 Weakly correlated
34 ZNF320 1 28.9 Weakly correlated
35 ZNF257 1 0.0 Weakly correlated
36 ZFP30 1 99.0 Highly correlated
37 ZNF92 1 28.9 Weakly correlated
38 ZNF584 1 99.0 Highly correlated
39 ZNF549 1 87.0 Moderately correlated
40 ZNF485 1 94.0 Moderately correlated
41 ZNF133 1 99.0 Highly correlated
42 ZNF140 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Highly correlated