ZRdb KZFP & Repeats
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LTR_MAMREP1151

  • Name
    MAMREP1151
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000985
Description :

Possibly an LTR, but the 5' end is likely incorrect (e.g. no TSDs havebeen detected). Roughly 800 copies can be detected in the reconstructedLaurasiatherian ancestor, at a 25% substitution level. MamRep1151 showsunconvincing similarity to both the Zaphod DNA transposon, and the MER51ERV retrotransposon.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgggatgacataattgtttccttagtgggtaagcatcttttaaccccgggaagatttagaattaagtatagaaatgntnaagnaaatcaaacccatagtattaatatttttgtgttaaggaatctgtgcatatttggtattttaagtatttgtaatgtttaagagaatttggcntattagagtaacagatcagccttgtgattccaatttaaaatgtgtaattgagtaattgatttagacttgtgattttaagttgaaatcttactaagtttataaacagtattggaacgtttaagagaacttaagattcaccatatttataagtttaatttattagatttataagaattacttaagtacttgggaaggttttgcttgttaagtcagacaattgaagtacttaaaaaggaaatcgaatatattaaatttataaatgcagtttaaaatgtttaagggaatttaattaagtttgtaaatgggaccaaacattaatcaaagnccccttaaaagtgattgttaaaatttgctagatttataaatagaataataagatttgtaagttgaacttaaaagcttaaggaagaactaggtttttaaatttgtaactttaataaattgaatattaatttttaaaaccaaagtaacttctgaatagtcttttctgcgcacaaaagccgccctcgaggacaccaaaaaactcacattgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 33 99.0 Highly correlated
2 ZNF394 16 99.0 Highly correlated
3 ZNF2 8 99.0 Highly correlated
4 ZNF101 7 43.0 Weakly correlated
5 ZKSCAN1 6 160.0 Weakly correlated
6 ZFP37 6 99.0 Highly correlated
7 ZNF317 6 99.0 Highly correlated
8 ZNF766 6 43.0 Weakly correlated
9 ZNF679 5 28.9 Weakly correlated
10 ZFP69B 4 99.0 Highly correlated
11 ZNF331 4 94.0 Moderately correlated
12 ZNF75D 4 94.0 Moderately correlated
13 ZNF18 4 160.0 Weakly correlated
14 ZNF589 3 28.9 Weakly correlated
15 ZNF263 3 180.0 Weakly correlated
16 ZNF792 3 94.0 Moderately correlated
17 ZNF723 3 15.2 Weakly correlated
18 ZNF558 3 99.0 Highly correlated
19 ZNF324 3 99.0 Highly correlated
20 ZNF8 3 99.0 Highly correlated
21 ZNF479 3 6.4 Weakly correlated
22 ZIM3 3 87.0 Moderately correlated
23 ZNF610 2 28.9 Weakly correlated
24 ZNF486 2 8.6 Weakly correlated
25 ZNF680 2 28.9 Weakly correlated
26 ZNF554 2 99.0 Highly correlated
27 ZNF584 2 99.0 Highly correlated
28 ZNF716 2 19.6 Weakly correlated
29 ZNF274 2 99.0 Highly correlated
30 ZNF264 2 99.0 Highly correlated
31 ZNF257 2 0.0 Weakly correlated
32 ZNF175 2 94.0 Moderately correlated
33 ZNF816 2 28.9 Weakly correlated
34 ZNF705B 1 28.9 Weakly correlated
35 ZNF695 1 28.9 Weakly correlated
36 ZNF705D 1 28.9 Weakly correlated
37 ZNF641 1 99.0 Highly correlated
38 ZNF778 1 74.0 Weakly correlated
39 ZNF92 1 28.9 Weakly correlated
40 ZNF287 1 99.0 Highly correlated
41 ZKSCAN8 1 160.0 Weakly correlated
42 ZNF133 1 99.0 Highly correlated
43 ZNF140 1 99.0 Highly correlated
44 ZNF197 1 99.0 Highly correlated
45 ZNF202 1 160.0 Weakly correlated
46 ZNF251 1 94.0 Moderately correlated
47 ZNF273 1 28.9 Weakly correlated
48 ZNF284 1 43.0 Weakly correlated
49 ZNF547 1 74.0 Weakly correlated
50 ZNF354C 1 99.0 Highly correlated
51 ZNF441 1 43.0 Weakly correlated
52 ZNF460 1 74.0 Weakly correlated
53 ZNF485 1 94.0 Moderately correlated
54 ZNF506 1 28.9 Weakly correlated
55 ZNF528 1 43.0 Weakly correlated
56 ZNF534 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF101 2 43.0 Weakly correlated
2 ZNF382 2 99.0 Highly correlated
3 ZNF479 2 6.4 Weakly correlated
4 ZNF75D 2 94.0 Moderately correlated
5 ZIM3 1 87.0 Moderately correlated
6 ZNF140 1 99.0 Highly correlated
7 ZNF695 1 28.9 Weakly correlated
8 ZNF705D 1 28.9 Weakly correlated
9 ZNF679 1 28.9 Weakly correlated
10 ZNF394 1 99.0 Highly correlated
11 ZNF287 1 99.0 Highly correlated
12 ZNF202 1 160.0 Weakly correlated
13 ZNF723 1 15.2 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats