ZRdb KZFP & Repeats
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LTR_MAMGYPSY2-LTR

  • Name
    MAMGYPSY2-LTR
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001201
Description :

Copies in marsupials but not in platypus. May represent a multitude ofsubfamilies.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttatgtatgccagggggcgctgtggttcaatgttagtgtttttgttccttttgagttcctgtagttgtatgctgcagtgatttagggtggggttagcccagagtagttttgcagcaataaaggactgttttgttgaaggcctgctcgtcccttgcctgttttactgctacccaacacaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 39 99.0 Highly correlated
2 ZNF2 19 99.0 Highly correlated
3 ZNF394 16 99.0 Highly correlated
4 ZIM3 11 87.0 Moderately correlated
5 ZFP37 10 99.0 Highly correlated
6 ZNF18 10 160.0 Weakly correlated
7 ZNF766 10 43.0 Weakly correlated
8 ZNF680 9 28.9 Weakly correlated
9 ZNF263 9 180.0 Weakly correlated
10 ZNF101 7 43.0 Weakly correlated
11 ZFP69B 6 99.0 Highly correlated
12 ZNF558 6 99.0 Highly correlated
13 ZNF610 6 28.9 Weakly correlated
14 ZNF317 5 99.0 Highly correlated
15 ZNF324 5 99.0 Highly correlated
16 ZNF597 4 94.0 Moderately correlated
17 ZNF197 4 99.0 Highly correlated
18 ZNF350 4 99.0 Highly correlated
19 ZNF679 4 28.9 Weakly correlated
20 ZNF251 3 94.0 Moderately correlated
21 ZNF589 3 28.9 Weakly correlated
22 ZKSCAN1 3 160.0 Weakly correlated
23 ZNF175 3 94.0 Moderately correlated
24 ZNF701 3 28.9 Weakly correlated
25 ZNF723 3 15.2 Weakly correlated
26 ZNF792 2 94.0 Moderately correlated
27 ZNF778 2 74.0 Weakly correlated
28 ZNF84 2 99.0 Highly correlated
29 ZNF695 2 28.9 Weakly correlated
30 ZNF568 2 99.0 Highly correlated
31 ZNF92 2 28.9 Weakly correlated
32 ZNF547 2 74.0 Weakly correlated
33 ZKSCAN8 2 160.0 Weakly correlated
34 ZNF506 2 28.9 Weakly correlated
35 ZNF486 2 8.6 Weakly correlated
36 ZNF485 2 94.0 Moderately correlated
37 ZNF257 2 0.0 Weakly correlated
38 ZNF730 1 19.6 Weakly correlated
39 ZNF705B 1 28.9 Weakly correlated
40 ZNF75A 1 94.0 Moderately correlated
41 ZNF222 1 43.0 Weakly correlated
42 ZNF189 1 99.0 Highly correlated
43 ZNF77 1 87.0 Moderately correlated
44 ZNF182 1 99.0 Highly correlated
45 ZNF816 1 28.9 Weakly correlated
46 ZNF846 1 74.0 Weakly correlated
47 ZNF160 1 74.0 Weakly correlated
48 ZNF878 1 43.0 Weakly correlated
49 ZNF8 1 99.0 Highly correlated
50 ZNF230 1 28.9 Weakly correlated
51 ZNF707 1 74.0 Weakly correlated
52 ZNF528 1 43.0 Weakly correlated
53 ZNF264 1 99.0 Highly correlated
54 ZNF30 1 94.0 Moderately correlated
55 ZNF343 1 74.0 Weakly correlated
56 ZNF641 1 99.0 Highly correlated
57 ZNF429 1 28.9 Weakly correlated
58 ZNF440 1 28.9 Weakly correlated
59 ZNF44 1 43.0 Weakly correlated
60 ZNF585B 1 99.0 Highly correlated
61 ZNF554 1 99.0 Highly correlated
62 ZNF534 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 7 87.0 Moderately correlated
2 ZNF723 3 15.2 Weakly correlated
3 ZNF382 2 99.0 Highly correlated
4 ZNF485 2 94.0 Moderately correlated
5 ZNF2 2 99.0 Highly correlated
6 ZNF680 2 28.9 Weakly correlated
7 ZNF558 1 99.0 Highly correlated
8 ZNF766 1 43.0 Weakly correlated
9 ZNF429 1 28.9 Weakly correlated
10 ZNF534 1 19.6 Weakly correlated
11 ZNF506 1 28.9 Weakly correlated
12 ZNF792 1 94.0 Moderately correlated
13 ZNF679 1 28.9 Weakly correlated
14 ZNF343 1 74.0 Weakly correlated
15 ZNF264 1 99.0 Highly correlated
16 ZNF44 1 43.0 Weakly correlated
17 ZNF350 1 99.0 Highly correlated
18 ZNF251 1 94.0 Moderately correlated
19 ZNF701 1 28.9 Weakly correlated
20 ZNF263 1 180.0 Weakly correlated
21 ZNF597 1 94.0 Moderately correlated
22 ZNF317 1 99.0 Highly correlated
23 ZNF257 1 0.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats