ZRdb KZFP & Repeats
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LTR_MAMGYPSY2-I

  • Name
    MAMGYPSY2-I
  • Repbase
    X2_LR
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001304
Description :

Observed in laurasiatherian and boreoeutherian genomes, but no copies inplatypus.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
acattttctggcgacgaggatgggatcctgttaaaaagaaagctggacaacagcaggcagtgtaaatccactctcaagtactactggtaagcaattgaatacggcctccaccctggaacttgagcagaccctgtgcttaaaatggctgctttggagcatattgaagagtttgatgtcagtcancctgcttcctgggattcatatgctgagaggctttcattctatcttgaagcaaacaaaatagagggccctgaacagaagcatgctgtgctcctgacngtctgtggggcccaaacatntgccataataaggtctctcaccgtccctgcttcacctaagactaggacatttgatgaacttgtgggattattgaaggcgcacttctcaccagcaccatcagtcattgttcagagatttaaatttcacaaatggaatcaacagcctggtgagggcattgctgcttatattgcagagctgcgccatctgtctcaacactgcaattttggggatttcttagatgacatgttgcgggatcgccttgtatgcggagttcacgatgaagccctccaacggcgcctcttgactgaaccaaatttgacatttataatggcccaagaaaaggccctagccagtgagactgcatcactacatgtcacagaaattaaaggagcagcttctaatataaatgctgtccataacacgcaggcagagagctcttgccaacagggtcagcagaacacaggaaatgcncgttccagaatatctgcagatcagttcagacataccaacccctgctcaggctgcggagggttacaccaacgctctgcttgcagattcaaggatgcggagtgcagattctgcaagaggaagggccaccttgagagagtatgccgttcaaaatccattagaatgaagtccaggaactgtcgtagcagttcacatcacctggcatcaggtgatcttgattattcacatgacagtgaagcccaggaattgtatcatattcagagggtccagggcaagatgcctcaggatactgcagtatttgcaacagtactcataaatggccatgagtgcaagatggaagtcgactccggttgtggtatatcaataatcggtaaagataccttccacaatattttctcacaaggccctttgccaaagttgttgaggccaccatgcattcttcaagattacaatgatcacacagttgatgttgctggaagctgtgttgtgaatgtgcagcgtggctccttcacggagaagcttccacttatcatcgcaagggggcagcgcaaaagcctcttgggaaggaactggttcacaccactaggaatcagtgtccaaggcattcataccattagaacagcccgactacaggaagttgtcaacagatttcccaaggtattctccgaggaactgggagcttacaagagggagccagtgtcattccatctggatccagccattgcaccaattcacttgaaagctagaaatgtaccttttgctctaaggaaaaaaantgaagaagagcttgagcatctaatcaaacaaggtgccctcgaaccagttacacatacccggtgggctataccaattgcgccggtactaaagcctaatggtaaggtgagactttgtggagactacaagtgcactgtgaataaggcacttaagcagcacccatatccagtgcctgcagtcaatcaactccttgctgttcttgctggggaaaaggtctttgcgaaacttgaccttgcccaagcttatcaacagctgatcgtcagtgatgctactgcagacgcccaaacaatcatcactcatcgaggggcattccgagttaagcgccttcagttcggaatttctgttgcccctggaattttccagtgcttcatggagaccctgctttctaggattccaggtgtggtaccatatttcgatgatgtcctgatcatgggatcaacagaggatgaactcgcggaaagacttcaggaagtcctacatcgtttcgatacatcaggtatccgagtgaaaaaggagaaatgtgaaatcggaacttccagtgtcaccttcttaggctaccgcatcaatgctgctggtattcaccccactcaagataaggtacgtgcaatccatgacgcgcctactccaaaaacaaagcaagagcttcaagccttcctggggctactcaatttctaccatgtttttcttccacaaaaggcaaccattgctgagccacttcatcgcctactgggaaaaggcgttccgtggcgttggactcgccagcatgaggacgctttccggaatgtcaagcagttattgacttccgagtctgtgctagtacattacgatgaacataaaccactgtttcttaccactgacgcttcaccttacggtgctggagctgtgcttagccacaaaatgccagatggcactgaggcaccaattgcttactactcaagaacaatgtcatctacagaatggaactacgcacaaattgacaaagaagcccttgctgttatcgcgggagtcaagaagttccacaactacctctacggccgtgcctttacaatttgtactgatcacaagcctctttggggactcttttctaaggataagcctacgcccttaattatgtcaccacgtatgcagcgctggagtcttttgctcagtgcttatgactacgcgcttgtctacaagcctggaagagcaatatcgaatgctgatgccctgagccgtctgccactgcagatcccagattatgttgtgccacttccactggaagttttgatgttagaagacctccctgacccacctcttcaggctgatcaaatcgcacgattaactgcgtgggatcccagattggtccgtgtcttaaactgggtgtggagggggtgtccagtagagaaactgcctgaggaattcaagccattcacaagccatcaacatgagttatctgcccataaaggatgccttttatggggaaatcgcattgttattccagaaggcggtcatcacgttatcttggccacactacatgcagcacatccgggaattgttcgcatgaaagcattggctagaagctatgtctggtggcctggaattgattctgatattgaaaagactgtaaaggagtgtagcacatgccaggctactcggcataacccgccaaaggcacctacttttccatggaaagtgaccaagaagccttggtcaagaatccatattgattttgcaggaccattccaggggaagaacttcttgattgtggtagactccttctcaaaatggctcgaagtgctcctagttccatctcaaacctctgctgcaacaatcacagctctgcgccagttatttgcaacacacggattgccagacactatcgtttctgacaatgggtctgcatttacctcagttgagtttaaggaatttgtggacaggaaccttatccgagctgtcaccatcgcgcctcatcaccctcaagcaaatggtcaggctgaaaggatggtgcagactactaaggatgccctgaagcggattgttggaggagattggccaacaagacttgccaggtttctcatcgctcaacatgtcactccatgttcaacaacaggagtcagtcctgctgaattactaatggggcgacgtctcaagacttgcctcgaccgtctccatccagacttagatgaggacttacaagacaaacaagaatgtattctggatgctgctctgtctgcacctactcttcgctcatttttaccacaagagttagtctttgctaggaactatggagctggaccaaggtgggttcctgccactataattgaggtcacggggcctgtgtcatacaaggtccagagtgcagatgggccggtgtggcatcgccgtgttgatcaactgcgaaggcgttcctcccagggtgacttgacaacagcagaaccattagaagcatctcctctagagccatctggcgttgatttttcagctatacctcctgaggactcaccagagccacaaagtgaaggaagcaataattcttctctggccaccgcaactgctgaagtggagtcacctggtatttctacacccactagtataacacagagacagcctcgcaaaagggtacccccttgctggttaaaagattatgttagctaagggggaagggg
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 91 99.0 Highly correlated
2 ZNF394 27 99.0 Highly correlated
3 ZIM3 22 87.0 Moderately correlated
4 ZNF317 19 99.0 Highly correlated
5 ZKSCAN1 17 160.0 Weakly correlated
6 ZFP37 16 99.0 Highly correlated
7 ZNF18 15 160.0 Weakly correlated
8 ZNF558 15 99.0 Highly correlated
9 ZNF766 14 43.0 Weakly correlated
10 ZNF479 14 6.4 Weakly correlated
11 ZNF263 14 180.0 Weakly correlated
12 ZNF680 13 28.9 Weakly correlated
13 ZNF589 13 28.9 Weakly correlated
14 ZNF2 12 99.0 Highly correlated
15 ZNF793 12 99.0 Highly correlated
16 ZNF101 9 43.0 Weakly correlated
17 ZNF175 9 94.0 Moderately correlated
18 ZNF324 9 99.0 Highly correlated
19 ZNF584 8 99.0 Highly correlated
20 ZFP69B 8 99.0 Highly correlated
21 ZKSCAN8 7 160.0 Weakly correlated
22 ZNF610 7 28.9 Weakly correlated
23 ZNF701 7 28.9 Weakly correlated
24 ZNF197 6 99.0 Highly correlated
25 ZNF679 6 28.9 Weakly correlated
26 ZNF554 5 99.0 Highly correlated
27 ZNF92 5 28.9 Weakly correlated
28 ZNF528 4 43.0 Weakly correlated
29 ZNF549 4 87.0 Moderately correlated
30 ZNF490 4 43.0 Weakly correlated
31 ZNF534 4 19.6 Weakly correlated
32 ZNF251 4 94.0 Moderately correlated
33 ZNF723 4 15.2 Weakly correlated
34 ZNF705B 3 28.9 Weakly correlated
35 ZNF705D 3 28.9 Weakly correlated
36 ZNF257 3 0.0 Weakly correlated
37 ZNF735 3 28.9 Weakly correlated
38 ZNF75D 3 94.0 Moderately correlated
39 ZNF133 3 99.0 Highly correlated
40 ZNF597 2 94.0 Moderately correlated
41 ZNF563 2 28.9 Weakly correlated
42 ZNF845 2 28.9 Weakly correlated
43 ZFP28 2 99.0 Highly correlated
44 ZNF320 2 28.9 Weakly correlated
45 ZNF331 2 94.0 Moderately correlated
46 ZNF486 2 8.6 Weakly correlated
47 ZFP57 2 87.0 Moderately correlated
48 ZNF429 2 28.9 Weakly correlated
49 ZNF778 1 74.0 Weakly correlated
50 ZNF274 1 99.0 Highly correlated
51 ZNF202 1 160.0 Weakly correlated
52 ZNF182 1 99.0 Highly correlated
53 ZNF17 1 69.0 Weakly correlated
54 ZNF140 1 99.0 Highly correlated
55 PRDM9 1 0.0 Weakly correlated
56 ZNF786 1 99.0 Highly correlated
57 ZNF792 1 94.0 Moderately correlated
58 ZKSCAN5 1 160.0 Weakly correlated
59 ZNF8 1 99.0 Highly correlated
60 ZNF530 1 28.9 Weakly correlated
61 ZNF30 1 94.0 Moderately correlated
62 ZNF350 1 99.0 Highly correlated
63 ZNF641 1 99.0 Highly correlated
64 ZNF41 1 99.0 Highly correlated
65 ZNF436 1 180.0 Weakly correlated
66 ZNF585A 1 99.0 Highly correlated
67 ZNF440 1 28.9 Weakly correlated
68 ZNF573 1 94.0 Moderately correlated
69 ZNF445 1 99.0 Highly correlated
70 ZNF44 1 43.0 Weakly correlated
71 ZNF471 1 94.0 Moderately correlated
72 ZNF547 1 74.0 Weakly correlated
73 ZNF519 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 11 87.0 Moderately correlated
2 ZNF479 6 6.4 Weakly correlated
3 ZNF793 5 99.0 Highly correlated
4 ZNF701 5 28.9 Weakly correlated
5 ZNF101 4 43.0 Weakly correlated
6 ZNF680 4 28.9 Weakly correlated
7 ZNF263 4 180.0 Weakly correlated
8 ZNF317 3 99.0 Highly correlated
9 ZNF534 3 19.6 Weakly correlated
10 ZNF382 3 99.0 Highly correlated
11 ZNF18 3 160.0 Weakly correlated
12 ZFP37 2 99.0 Highly correlated
13 ZNF735 2 28.9 Weakly correlated
14 ZNF705D 2 28.9 Weakly correlated
15 ZNF705B 2 28.9 Weakly correlated
16 ZNF490 2 43.0 Weakly correlated
17 ZNF133 2 99.0 Highly correlated
18 ZNF75D 1 94.0 Moderately correlated
19 ZNF679 1 28.9 Weakly correlated
20 ZNF197 1 99.0 Highly correlated
21 ZNF320 1 28.9 Weakly correlated
22 ZNF549 1 87.0 Moderately correlated
23 ZNF175 1 94.0 Moderately correlated
24 ZNF350 1 99.0 Highly correlated
25 ZNF440 1 28.9 Weakly correlated
26 ZNF471 1 94.0 Moderately correlated
27 ZNF597 1 94.0 Moderately correlated
28 ZNF723 1 15.2 Weakly correlated
29 ZNF766 1 43.0 Weakly correlated
30 ZNF589 1 28.9 Weakly correlated
31 ZNF641 1 99.0 Highly correlated
32 ZNF584 1 99.0 Highly correlated
33 ZNF528 1 43.0 Weakly correlated
34 ZNF610 1 28.9 Weakly correlated
35 ZNF585A 1 99.0 Highly correlated
36 ZNF44 1 43.0 Weakly correlated
37 ZNF140 1 99.0 Highly correlated
38 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF479 6.4 Weakly correlated