ZRdb KZFP & Repeats
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LTR_MAMGYPLTR3A

  • Name
    MAMGYPLTR3A
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000983
Description :

MamGypLTR3a has 4bp TSDs. Termini are similar to those of LTR104_Mam.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagcggggtgcctggtgaggcagaacttaaaattttttagcgagagaagctgccagccgcttctctgtctaggtggagacagcaagtcaccttggagcagatcttctttgttctgggaagagtcacttgagtggcccctcttagttatgcaaatgtaaggcgagtaggcacccattgccctgggggaagggtgtaacaggaccttttgtggcctgacaaaggctgccccctccaataccccttggtatgcagagctggtcgctggggaggaggtgggcaaatttgcataggggccaaggagcctcctgggaggaaagggatcgagaccccgaccccttcccttttgaggttcaacgttattagaacctctctgatggactgggatggtcccgaccgaggtccgctggcaggaaaggacaccgagggtccccgagggaagggggagtctggactggtgacccgggctcaacaccagggcctggaggttcgtgggaagaggctggttccggcacagcgtgtggctgaggctggaagcccctccggacccagccaccctggctgagcgtgtgagtgtgaactaaagaggctgtaaccttggagcccgagcgtggggcaccactgcggcctgtgcagggatctggaccagcaagggcatcgccgcagcagtggacaagcgtccaccggactgcgcgggaccagtcttcaacagcgacaccgtgcggcagcaacngcagcggtggaccgatcagactttccagttctcctctcgcctggcgtttggaagcaggactgacccctttggactgagtaagcccccggggttcttggacaatttcaggagaaggggaggcctcaagagggagatactggacttcctgctaatangggcangtgggggctcgagcgattaattggaaaaataaaagagatgtgaccgtatttgtaccccaagctggtgaagcgggtcataccggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF2 143 99.0 Highly correlated
2 ZNF382 69 99.0 Highly correlated
3 ZNF263 38 180.0 Weakly correlated
4 ZNF766 30 43.0 Weakly correlated
5 ZKSCAN1 29 160.0 Weakly correlated
6 ZNF479 25 6.4 Weakly correlated
7 ZNF394 19 99.0 Highly correlated
8 ZNF324 17 99.0 Highly correlated
9 ZNF18 16 160.0 Weakly correlated
10 ZFP37 15 99.0 Highly correlated
11 ZNF701 14 28.9 Weakly correlated
12 ZIM3 14 87.0 Moderately correlated
13 ZNF554 12 99.0 Highly correlated
14 ZNF793 11 99.0 Highly correlated
15 ZNF317 11 99.0 Highly correlated
16 ZNF610 11 28.9 Weakly correlated
17 ZNF175 11 94.0 Moderately correlated
18 ZNF528 9 43.0 Weakly correlated
19 ZNF584 8 99.0 Highly correlated
20 ZNF589 8 28.9 Weakly correlated
21 ZNF705B 8 28.9 Weakly correlated
22 ZNF680 7 28.9 Weakly correlated
23 ZFP69B 7 99.0 Highly correlated
24 ZNF558 6 99.0 Highly correlated
25 ZNF679 6 28.9 Weakly correlated
26 ZNF534 6 19.6 Weakly correlated
27 ZNF197 6 99.0 Highly correlated
28 ZNF730 5 19.6 Weakly correlated
29 ZNF597 5 94.0 Moderately correlated
30 ZNF75D 5 94.0 Moderately correlated
31 ZNF682 5 28.9 Weakly correlated
32 ZNF519 5 19.6 Weakly correlated
33 ZNF101 5 43.0 Weakly correlated
34 ZNF92 4 28.9 Weakly correlated
35 ZNF274 4 99.0 Highly correlated
36 ZNF257 4 0.0 Weakly correlated
37 ZNF705D 4 28.9 Weakly correlated
38 ZNF723 4 15.2 Weakly correlated
39 ZNF506 4 28.9 Weakly correlated
40 ZNF485 4 94.0 Moderately correlated
41 ZNF735 4 28.9 Weakly correlated
42 ZNF331 3 94.0 Moderately correlated
43 ZKSCAN8 3 160.0 Weakly correlated
44 ZNF320 3 28.9 Weakly correlated
45 ZNF695 3 28.9 Weakly correlated
46 ZNF8 3 99.0 Highly correlated
47 ZNF264 3 99.0 Highly correlated
48 ZNF765 2 8.6 Weakly correlated
49 ZNF133 2 99.0 Highly correlated
50 ZNF778 2 74.0 Weakly correlated
51 ZNF816 2 28.9 Weakly correlated
52 ZNF169 2 94.0 Moderately correlated
53 ZNF674 2 99.0 Highly correlated
54 ZNF33A 2 99.0 Highly correlated
55 ZNF486 2 8.6 Weakly correlated
56 ZNF549 2 87.0 Moderately correlated
57 ZNF547 2 74.0 Weakly correlated
58 ZNF429 2 28.9 Weakly correlated
59 ZNF786 1 99.0 Highly correlated
60 ZNF707 1 74.0 Weakly correlated
61 ZNF510 1 99.0 Highly correlated
62 ZNF728 1 19.6 Weakly correlated
63 ZNF468 1 28.9 Weakly correlated
64 ZNF124 1 43.0 Weakly correlated
65 ZNF441 1 43.0 Weakly correlated
66 ZNF440 1 28.9 Weakly correlated
67 ZNF530 1 28.9 Weakly correlated
68 ZNF792 1 94.0 Moderately correlated
69 ZNF420 1 94.0 Moderately correlated
70 ZNF808 1 19.6 Weakly correlated
71 ZNF417 1 28.9 Weakly correlated
72 ZNF878 1 43.0 Weakly correlated
73 ZNF337 1 43.0 Weakly correlated
74 ZNF91 1 6.0 Weakly correlated
75 ZNF343 1 74.0 Weakly correlated
76 ZNF641 1 99.0 Highly correlated
77 ZNF568 1 99.0 Highly correlated
78 ZNF573 1 94.0 Moderately correlated
79 ZNF273 1 28.9 Weakly correlated
80 ZNF585A 1 99.0 Highly correlated
81 ZNF587 1 28.9 Weakly correlated
82 ZNF284 1 43.0 Weakly correlated
83 ZNF607 1 43.0 Weakly correlated
84 ZNF230 1 28.9 Weakly correlated
85 RBAK 1 99.0 Highly correlated
86 ZNF669 1 43.0 Weakly correlated
87 ZNF677 1 99.0 Highly correlated
88 ZNF222 1 43.0 Weakly correlated
89 ZNF189 1 99.0 Highly correlated
90 ZNF182 1 99.0 Highly correlated
91 ZNF30 1 94.0 Moderately correlated
92 ZNF17 1 69.0 Weakly correlated
93 ZNF557 1 15.2 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF2 17 99.0 Highly correlated
2 ZNF479 9 6.4 Weakly correlated
3 ZNF263 8 180.0 Weakly correlated
4 ZNF485 3 94.0 Moderately correlated
5 ZNF382 3 99.0 Highly correlated
6 ZNF735 3 28.9 Weakly correlated
7 ZFP37 3 99.0 Highly correlated
8 ZNF534 3 19.6 Weakly correlated
9 ZKSCAN1 3 160.0 Weakly correlated
10 ZNF680 2 28.9 Weakly correlated
11 ZNF674 2 99.0 Highly correlated
12 ZIM3 2 87.0 Moderately correlated
13 ZNF701 2 28.9 Weakly correlated
14 ZNF75D 2 94.0 Moderately correlated
15 ZNF682 2 28.9 Weakly correlated
16 ZNF554 2 99.0 Highly correlated
17 ZNF18 2 160.0 Weakly correlated
18 ZNF124 1 43.0 Weakly correlated
19 ZNF528 1 43.0 Weakly correlated
20 ZNF793 1 99.0 Highly correlated
21 ZNF597 1 94.0 Moderately correlated
22 ZNF317 1 99.0 Highly correlated
23 ZNF324 1 99.0 Highly correlated
24 ZNF506 1 28.9 Weakly correlated
25 ZNF677 1 99.0 Highly correlated
26 ZNF257 1 0.0 Weakly correlated
27 ZNF549 1 87.0 Moderately correlated
28 ZNF792 1 94.0 Moderately correlated
29 ZNF530 1 28.9 Weakly correlated
30 ZNF486 1 8.6 Weakly correlated
31 ZNF189 1 99.0 Highly correlated
32 ZNF723 1 15.2 Weakly correlated
33 ZNF587 1 28.9 Weakly correlated
34 ZNF519 1 19.6 Weakly correlated
35 ZNF101 1 43.0 Weakly correlated
36 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF2 99.0 Highly correlated