ZRdb KZFP & Repeats
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LTR_MAMGYPLTR2B

  • Name
    MAMGYPLTR2B
  • Repbase
    MamGypLTR2b
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000980
Description :

MamGypLTR2b has 4 bp TSDs. The 5' end has not been fully reconstructed.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
cctccctccccccagactagataaagactctctggactggagggaggaggagagccggagaggagagagagagttagacgctggtgggtctctgagaagggccctgcgcccctctcccctcctgggccgatcccggggagggggnaaatggaaanctcagataggtttggggatccgagagcagagaggacttgtgcctccttcccgggtgaagcctgggaggcggcaagcctcgcagagnngccctgcatccgcatggcntgggagcagcagagcagagacggctgcgtggggtgtccgggcagaggggcctgagaggccnccccgagtctcctgacagcccagagtggcacgggagagcagccaagtttccctgctcctccgagaggggcacgagagntagctgagagagagncgtggcaganactagnagaggcctgcagccagggnncagctgggangagcgnagggngcatgcctgggagagggatgccagcggccggagaccagatgggaagtggccacctcagcggatgccagcggggagggatgacgacgnccgaggaccaganaggacaaggtacatctcagcggatgccagcagaccaggacagatgangaccgagaagcggacgccnccccctcccaatgatacggcanctgtgtaagccccctggaacttaganncaaccccagggagaaggggagagaagggggaaaatcctgaattgactgagttttaaacctgaaatgactgagaaatcactgaatttgactgagtttacctggaantgactagattaagttttctgccatcaggcagaatgggggctcgagatagaaattaagttcagttatagaaaaataaagttacatttttgcacacctgagtttgtggcttgtgaaattcgtacctgctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 23 99.0 Highly correlated
2 ZNF263 9 180.0 Weakly correlated
3 ZNF793 7 99.0 Highly correlated
4 ZFP37 6 99.0 Highly correlated
5 ZNF2 6 99.0 Highly correlated
6 ZNF534 5 19.6 Weakly correlated
7 ZNF394 5 99.0 Highly correlated
8 ZNF766 5 43.0 Weakly correlated
9 ZNF680 4 28.9 Weakly correlated
10 ZKSCAN1 4 160.0 Weakly correlated
11 ZNF18 4 160.0 Weakly correlated
12 ZNF679 3 28.9 Weakly correlated
13 ZNF589 3 28.9 Weakly correlated
14 ZNF705B 3 28.9 Weakly correlated
15 ZNF479 3 6.4 Weakly correlated
16 ZFP69B 3 99.0 Highly correlated
17 ZNF175 3 94.0 Moderately correlated
18 ZNF101 3 43.0 Weakly correlated
19 ZNF274 2 99.0 Highly correlated
20 ZNF610 2 28.9 Weakly correlated
21 ZNF597 2 94.0 Moderately correlated
22 ZNF585B 2 99.0 Highly correlated
23 ZNF584 2 99.0 Highly correlated
24 ZNF563 2 28.9 Weakly correlated
25 ZNF558 2 99.0 Highly correlated
26 ZNF554 2 99.0 Highly correlated
27 ZNF701 2 28.9 Weakly correlated
28 ZKSCAN8 2 160.0 Weakly correlated
29 ZNF705D 2 28.9 Weakly correlated
30 ZNF786 2 99.0 Highly correlated
31 ZNF324 2 99.0 Highly correlated
32 ZNF320 2 28.9 Weakly correlated
33 ZNF317 2 99.0 Highly correlated
34 ZNF257 2 0.0 Weakly correlated
35 ZNF723 2 15.2 Weakly correlated
36 ZNF75D 2 94.0 Moderately correlated
37 ZNF792 1 94.0 Moderately correlated
38 ZNF816 1 28.9 Weakly correlated
39 ZNF707 1 74.0 Weakly correlated
40 ZNF8 1 99.0 Highly correlated
41 ZNF641 1 99.0 Highly correlated
42 ZNF547 1 74.0 Weakly correlated
43 ZNF483 1 99.0 Highly correlated
44 ZNF425 1 94.0 Moderately correlated
45 ZNF28 1 28.9 Weakly correlated
46 ZNF282 1 319.0 Weakly correlated
47 ZNF26 1 99.0 Highly correlated
48 ZNF251 1 94.0 Moderately correlated
49 ZNF202 1 160.0 Weakly correlated
50 ZNF197 1 99.0 Highly correlated
51 ZNF182 1 99.0 Highly correlated
52 ZIM3 1 87.0 Moderately correlated
53 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 3 99.0 Highly correlated
2 ZNF534 2 19.6 Weakly correlated
3 ZNF263 1 180.0 Weakly correlated
4 ZNF723 1 15.2 Weakly correlated
5 ZNF680 1 28.9 Weakly correlated
6 ZNF75D 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats