ZRdb KZFP & Repeats
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LTR_MAMGYPLTR1D

  • Name
    MAMGYPLTR1D
  • Repbase
    MamGypLTR1d
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000694
Description :

MamGypLTR1d has 4 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggctggataatattttgagatattaatttatgtttttttttcctcctgtattttcccctttcctccttccccccattcaagcaggtagccggctctgtgctcattgcctcaggggaggnatgtggcagggcagaaaagcagaagtagcctgcaagtctttctggcttttgtnttccaaaagcctaagcccttaggggaactagagggtttgnggaagaggcaaaagggaanaagtgtcttggagaaanacgaggggagagaggacttcctcctccccagactagaaagagattcccctgggctgggaaggggaggggagaagagaaggagagangtntgggtccnagagcagagggacctgngccctgcttcccggcagcgccgctggggaggcggcaagaccccagagaggaatggctgcgtggtgcgtctaggcagacgggaccataggcagcctcgcaaaagattcccgtgccccaagcatggcacggaagcagcagagagccgccggacctgaaggggccatgcggacagggacaacggacgtctcagcggtaacctgtgtggaccgatgaccgaggaccagatccnctccccncccccgacgccttggcactgcgtaagatccctggaactgtggcacaaccctgggggagggagggggaaccccaagaangactgaggttaagttttccgccagcccagcggaatgggggctcagagtcagaaattaagttgagttatagaaaataaagaaagtnatatttcttgcacacctgagtttgtggactgagattcatacctgctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 22 99.0 Highly correlated
2 ZNF766 15 43.0 Weakly correlated
3 ZNF534 9 19.6 Weakly correlated
4 ZNF479 9 6.4 Weakly correlated
5 ZNF263 9 180.0 Weakly correlated
6 ZNF394 6 99.0 Highly correlated
7 ZNF705D 6 28.9 Weakly correlated
8 ZNF324 5 99.0 Highly correlated
9 ZNF705B 5 28.9 Weakly correlated
10 ZNF585B 4 99.0 Highly correlated
11 ZNF558 4 99.0 Highly correlated
12 ZNF723 4 15.2 Weakly correlated
13 ZNF793 4 99.0 Highly correlated
14 ZNF589 3 28.9 Weakly correlated
15 ZNF347 3 43.0 Weakly correlated
16 ZNF2 3 99.0 Highly correlated
17 ZNF169 3 94.0 Moderately correlated
18 ZNF101 3 43.0 Weakly correlated
19 ZNF490 2 43.0 Weakly correlated
20 ZNF519 2 19.6 Weakly correlated
21 ZNF554 2 99.0 Highly correlated
22 ZNF680 2 28.9 Weakly correlated
23 ZNF679 2 28.9 Weakly correlated
24 ZNF707 2 74.0 Weakly correlated
25 ZNF331 2 94.0 Moderately correlated
26 ZNF30 2 94.0 Moderately correlated
27 ZNF257 2 0.0 Weakly correlated
28 ZNF224 2 69.0 Weakly correlated
29 ZNF18 2 160.0 Weakly correlated
30 ZNF878 2 43.0 Weakly correlated
31 ZKSCAN8 2 160.0 Weakly correlated
32 ZKSCAN1 2 160.0 Weakly correlated
33 ZFP37 2 99.0 Highly correlated
34 ZFP69B 2 99.0 Highly correlated
35 ZNF92 1 28.9 Weakly correlated
36 ZNF778 1 74.0 Weakly correlated
37 ZNF701 1 28.9 Weakly correlated
38 ZNF91 1 6.0 Weakly correlated
39 ZNF674 1 99.0 Highly correlated
40 ZNF610 1 28.9 Weakly correlated
41 ZNF585A 1 99.0 Highly correlated
42 ZNF584 1 99.0 Highly correlated
43 ZNF567 1 99.0 Highly correlated
44 ZNF528 1 43.0 Weakly correlated
45 ZNF485 1 94.0 Moderately correlated
46 ZNF429 1 28.9 Weakly correlated
47 ZNF320 1 28.9 Weakly correlated
48 ZNF317 1 99.0 Highly correlated
49 ZNF287 1 99.0 Highly correlated
50 ZNF273 1 28.9 Weakly correlated
51 ZNF251 1 94.0 Moderately correlated
52 ZNF189 1 99.0 Highly correlated
53 ZNF175 1 94.0 Moderately correlated
54 ZFP69 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 6 19.6 Weakly correlated
2 ZNF479 5 6.4 Weakly correlated
3 ZNF705D 3 28.9 Weakly correlated
4 ZNF793 3 99.0 Highly correlated
5 ZNF169 2 94.0 Moderately correlated
6 ZNF263 2 180.0 Weakly correlated
7 ZNF705B 2 28.9 Weakly correlated
8 ZNF347 1 43.0 Weakly correlated
9 ZNF585A 1 99.0 Highly correlated
10 ZNF723 1 15.2 Weakly correlated
11 ZNF30 1 94.0 Moderately correlated
12 ZNF766 1 43.0 Weakly correlated
13 ZNF585B 1 99.0 Highly correlated
14 ZNF331 1 94.0 Moderately correlated
15 ZNF320 1 28.9 Weakly correlated
16 ZNF251 1 94.0 Moderately correlated
17 ZNF429 1 28.9 Weakly correlated
18 ZNF382 1 99.0 Highly correlated
19 ZNF485 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats