ZRdb KZFP & Repeats
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LTR_MAMGYPLTR1C

  • Name
    MAMGYPLTR1C
  • Repbase
    MamGypLTR1c
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000693
Description :

MamGypLTR1c has 4 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcaggataatattttgagatattaatctatgtntttttttcctcctgtatttccccctttcctccttccccccattcaagcaggtagctggctctgtgctcattgcctcaggggaggnatgtggcagggcagaaagcagaagtagcctgcaagtctttctggcttttgttttccaaaagcctaagcccttaggagaacttagaggatttncggaggaggcataaagaaagngtcttgaagaaacatgaagggagaaggatttcccccagactagaagggagagattcccccgggctgggaagggaanggagagaggtctgtgggtcctgggaggagagcagnggggacctgngccctgcttcctggcagcgccccggggaggcggcaagaccccagagaggaatggctgcgtggtgcgtctaggcagacgggaccacaggcagcctcgcagaagattcccgtgccccaagcgtggcncggaagcagcagagagccgccggacctgaaggggccatgcggacagggacaatggacgtctcagcggnaacctgtgtggacagatgaccgaggaccagagggcncccccatccccaatgccttggcactgcgtaagatccctggaaccttggcacaaccctggggaagggagggggaaccccaagaatgactgagattaagtttcccaccagcccggcggaatgggggctcaaaatagaaattaagttganttatagaaaataaagaaatgtnatatttcttgcacacctgagtttgtggactgagattcatacctgctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF394 13 99.0 Highly correlated
2 ZNF263 13 180.0 Weakly correlated
3 ZIM3 11 87.0 Moderately correlated
4 ZNF382 11 99.0 Highly correlated
5 ZNF766 8 43.0 Weakly correlated
6 ZFP37 7 99.0 Highly correlated
7 ZNF479 7 6.4 Weakly correlated
8 ZNF534 7 19.6 Weakly correlated
9 ZNF680 6 28.9 Weakly correlated
10 ZNF705B 5 28.9 Weakly correlated
11 ZNF701 5 28.9 Weakly correlated
12 ZNF679 5 28.9 Weakly correlated
13 ZNF75D 5 94.0 Moderately correlated
14 ZNF793 5 99.0 Highly correlated
15 ZNF317 5 99.0 Highly correlated
16 ZNF597 4 94.0 Moderately correlated
17 ZNF257 4 0.0 Weakly correlated
18 ZNF705D 4 28.9 Weakly correlated
19 ZNF584 3 99.0 Highly correlated
20 ZKSCAN8 3 160.0 Weakly correlated
21 ZNF558 3 99.0 Highly correlated
22 ZNF589 3 28.9 Weakly correlated
23 ZNF175 3 94.0 Moderately correlated
24 ZNF554 2 99.0 Highly correlated
25 ZNF486 2 8.6 Weakly correlated
26 ZFP28 2 99.0 Highly correlated
27 ZNF485 2 94.0 Moderately correlated
28 ZNF92 2 28.9 Weakly correlated
29 ZNF100 2 28.9 Weakly correlated
30 ZNF324 2 99.0 Highly correlated
31 ZNF273 2 28.9 Weakly correlated
32 ZNF18 2 160.0 Weakly correlated
33 ZNF610 1 28.9 Weakly correlated
34 ZKSCAN1 1 160.0 Weakly correlated
35 ZNF878 1 43.0 Weakly correlated
36 ZNF101 1 43.0 Weakly correlated
37 ZNF133 1 99.0 Highly correlated
38 ZNF735 1 28.9 Weakly correlated
39 ZNF723 1 15.2 Weakly correlated
40 ZNF140 1 99.0 Highly correlated
41 ZNF141 1 43.0 Weakly correlated
42 ZNF157 1 99.0 Highly correlated
43 ZNF202 1 160.0 Weakly correlated
44 ZNF616 1 43.0 Weakly correlated
45 ZNF471 1 94.0 Moderately correlated
46 ZNF251 1 94.0 Moderately correlated
47 ZNF28 1 28.9 Weakly correlated
48 ZNF563 1 28.9 Weakly correlated
49 ZNF2 1 99.0 Highly correlated
50 ZNF334 1 99.0 Highly correlated
51 ZNF528 1 43.0 Weakly correlated
52 ZNF519 1 19.6 Weakly correlated
53 ZNF343 1 74.0 Weakly correlated
54 ZNF429 1 28.9 Weakly correlated
55 ZNF436 1 180.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 6 19.6 Weakly correlated
2 ZIM3 6 87.0 Moderately correlated
3 ZNF479 5 6.4 Weakly correlated
4 ZNF597 3 94.0 Moderately correlated
5 ZNF705D 3 28.9 Weakly correlated
6 ZNF793 2 99.0 Highly correlated
7 ZNF680 2 28.9 Weakly correlated
8 ZNF263 2 180.0 Weakly correlated
9 ZNF202 1 160.0 Weakly correlated
10 ZNF705B 1 28.9 Weakly correlated
11 ZNF701 1 28.9 Weakly correlated
12 ZNF485 1 94.0 Moderately correlated
13 ZNF554 1 99.0 Highly correlated
14 ZNF75D 1 94.0 Moderately correlated
15 ZNF257 1 0.0 Weakly correlated
16 ZNF141 1 43.0 Weakly correlated
17 ZNF133 1 99.0 Highly correlated
18 ZNF100 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated