ZRdb KZFP & Repeats
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LTR_MAMGYPLTR1B

  • Name
    MAMGYPLTR1B
  • Repbase
    MamGypLTR1b
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000692
Description :

MamGypLTR1b has 4 bp TSDs, and is associated with MamGyp-int.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcaggataatttattgagatattaatttgtgttttgctctctgtatttttcccttccctcccgattccaagaaggtagccaggccctttgtgctcccttgcctcgggggaggtttgtgttgcagggccgaaagcagaagttgcctgaagacaacccccttcctggcttttgttttcgaaagcctgagctcnttgaggagattatgctggtgccctgagggagagagggaggtgcttgaggggggagntgggagaaggnagaaaggggaggagnttccccaagactgggaaggggacaggagtctggcggntcctggagtagggatgaggcccagggccctgctccctggcagcgccccggggaggtggcaggacctcagaggggaatggctgcgtggtgcgcctagggaggctggaccctaggcaccggggctcccagcctcggcaaagattcccgtgcccaagcntggcacggaagcagcagagccgccngccttcaagggaccatgcgggcttggacaatgagcatntcagcggtgaccagtgtggaccgaagaccagagggccctccccgaatgttccgnnctgcgtaagacccccgggacctttgcacgaccctgggggagggagggggagccccaataatgactgagattgaatttcccgccagcctagtgggatgggggctcggagtcagatttaatttgatttaaagaaataaagaaatgtgacatttcttgcacacctgagtttgtggagtaagattcatacccgctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 25 180.0 Weakly correlated
2 ZNF382 15 99.0 Highly correlated
3 ZNF793 14 99.0 Highly correlated
4 ZNF680 9 28.9 Weakly correlated
5 ZNF2 9 99.0 Highly correlated
6 ZFP37 8 99.0 Highly correlated
7 ZNF479 8 6.4 Weakly correlated
8 ZNF705B 8 28.9 Weakly correlated
9 ZNF317 8 99.0 Highly correlated
10 ZNF394 7 99.0 Highly correlated
11 ZIM3 6 87.0 Moderately correlated
12 ZFP69B 6 99.0 Highly correlated
13 ZNF766 5 43.0 Weakly correlated
14 ZNF101 5 43.0 Weakly correlated
15 ZNF701 5 28.9 Weakly correlated
16 ZNF257 4 0.0 Weakly correlated
17 ZNF554 4 99.0 Highly correlated
18 ZNF705D 4 28.9 Weakly correlated
19 ZNF534 4 19.6 Weakly correlated
20 ZNF528 4 43.0 Weakly correlated
21 ZNF589 3 28.9 Weakly correlated
22 ZNF18 3 160.0 Weakly correlated
23 ZNF610 3 28.9 Weakly correlated
24 ZNF490 3 43.0 Weakly correlated
25 ZNF723 3 15.2 Weakly correlated
26 ZNF92 2 28.9 Weakly correlated
27 ZNF671 2 94.0 Moderately correlated
28 ZNF679 2 28.9 Weakly correlated
29 ZNF786 2 99.0 Highly correlated
30 ZNF75D 2 94.0 Moderately correlated
31 ZNF730 2 19.6 Weakly correlated
32 ZNF506 2 28.9 Weakly correlated
33 ZNF324 2 99.0 Highly correlated
34 ZNF28 2 28.9 Weakly correlated
35 ZNF197 2 99.0 Highly correlated
36 ZNF175 2 94.0 Moderately correlated
37 ZKSCAN1 2 160.0 Weakly correlated
38 ZIK1 2 87.0 Moderately correlated
39 ZFP57 2 87.0 Moderately correlated
40 ZNF584 1 99.0 Highly correlated
41 ZNF558 1 99.0 Highly correlated
42 ZNF549 1 87.0 Moderately correlated
43 ZNF471 1 94.0 Moderately correlated
44 ZNF429 1 28.9 Weakly correlated
45 ZNF347 1 43.0 Weakly correlated
46 ZNF264 1 99.0 Highly correlated
47 ZNF133 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 6 99.0 Highly correlated
2 ZNF263 6 180.0 Weakly correlated
3 ZNF257 3 0.0 Weakly correlated
4 ZNF479 3 6.4 Weakly correlated
5 ZNF680 2 28.9 Weakly correlated
6 ZNF506 2 28.9 Weakly correlated
7 ZNF723 2 15.2 Weakly correlated
8 ZNF534 2 19.6 Weakly correlated
9 ZNF766 1 43.0 Weakly correlated
10 ZFP37 1 99.0 Highly correlated
11 ZNF549 1 87.0 Moderately correlated
12 ZNF490 1 43.0 Weakly correlated
13 ZNF382 1 99.0 Highly correlated
14 ZNF2 1 99.0 Highly correlated
15 ZNF92 1 28.9 Weakly correlated
16 ZNF347 1 43.0 Weakly correlated
17 ZNF75D 1 94.0 Moderately correlated
18 ZNF701 1 28.9 Weakly correlated
19 ZNF671 1 94.0 Moderately correlated
20 ZNF18 1 160.0 Weakly correlated
21 ZNF133 1 99.0 Highly correlated
22 ZIM3 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF793 99.0 Highly correlated