ZRdb KZFP & Repeats
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LTR_MAMGYPLTR1A

  • Name
    MAMGYPLTR1A
  • Repbase
    MamGypLTR1a
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000691
Description :

MamGypLTR1a has 4 bp TSDs, and is associated with MamGyp-int.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcaggataatttattgagatattaatttgtgttttgctctctgtatttttcccttcccttcccattccaagcaggtagccaggcccttngtatttccttgcctcggggatttttgcagggcagaaagcagaagctgcttgaagtcaacggctcttcctgtcttttgtaaaagcctaagctcattgaagagattatgctaggtgtcccggagggggaggggagagaggggagtgcctttgagggcaagcgggagaaggagaaagaggaggagatttcccaggactgggaaggggacagaggtcngcgggtcccgcgagcagcggggacccgcgccccgctccgtggcagcgcccggggaggtggcaagacctcagaggggaatggctgcgtggtgcacctagggaggctggaccccgggcacnggggctcccagcctcgccaaagattcccgtgccccaagcatggcacggaagcagcagagccgccggacctgaagggaccatgcgggctgggacaatgggcgtctcagcggtaaccagtgtggaccgatgaccgatgaccggaggggcctccccgatgctttggcgctgcgtaagaccccgggacctttgcacaaccctgggggngggagggggagccccaataatgactgagattgaatttcccgccagcccggtaggatgggggctcagagtcagatttaagttgatttaaagaaataaagaaatgtgatatttcttgcacacctgagtttgtggactaagattcatacccgctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 17 99.0 Highly correlated
2 ZNF766 16 43.0 Weakly correlated
3 ZNF263 15 180.0 Weakly correlated
4 ZNF534 13 19.6 Weakly correlated
5 ZNF680 10 28.9 Weakly correlated
6 ZNF479 9 6.4 Weakly correlated
7 ZNF317 9 99.0 Highly correlated
8 ZIM3 9 87.0 Moderately correlated
9 ZNF589 8 28.9 Weakly correlated
10 ZNF394 8 99.0 Highly correlated
11 ZNF175 7 94.0 Moderately correlated
12 ZNF197 7 99.0 Highly correlated
13 ZNF18 6 160.0 Weakly correlated
14 ZNF793 6 99.0 Highly correlated
15 ZNF705D 6 28.9 Weakly correlated
16 ZNF705B 6 28.9 Weakly correlated
17 ZNF558 5 99.0 Highly correlated
18 ZNF2 5 99.0 Highly correlated
19 ZNF584 4 99.0 Highly correlated
20 ZNF679 4 28.9 Weakly correlated
21 ZFP37 4 99.0 Highly correlated
22 ZNF554 4 99.0 Highly correlated
23 ZNF597 4 94.0 Moderately correlated
24 ZKSCAN1 4 160.0 Weakly correlated
25 ZNF547 3 74.0 Weakly correlated
26 ZNF320 3 28.9 Weakly correlated
27 ZNF701 3 28.9 Weakly correlated
28 ZNF324 3 99.0 Highly correlated
29 ZNF257 3 0.0 Weakly correlated
30 ZNF251 3 94.0 Moderately correlated
31 ZNF101 3 43.0 Weakly correlated
32 ZKSCAN8 3 160.0 Weakly correlated
33 ZNF92 3 28.9 Weakly correlated
34 ZNF723 2 15.2 Weakly correlated
35 ZNF506 2 28.9 Weakly correlated
36 ZNF75D 2 94.0 Moderately correlated
37 ZNF786 2 99.0 Highly correlated
38 ZFP69B 2 99.0 Highly correlated
39 ZNF468 2 28.9 Weakly correlated
40 ZNF429 2 28.9 Weakly correlated
41 ZNF436 1 180.0 Weakly correlated
42 ZNF878 1 43.0 Weakly correlated
43 ZNF845 1 28.9 Weakly correlated
44 ZNF133 1 99.0 Highly correlated
45 ZNF792 1 94.0 Moderately correlated
46 ZNF169 1 94.0 Moderately correlated
47 ZNF184 1 99.0 Highly correlated
48 ZNF264 1 99.0 Highly correlated
49 ZNF735 1 28.9 Weakly correlated
50 ZNF563 1 28.9 Weakly correlated
51 ZNF439 1 8.6 Weakly correlated
52 ZNF695 1 28.9 Weakly correlated
53 ZNF484 1 99.0 Highly correlated
54 ZNF485 1 94.0 Moderately correlated
55 ZNF611 1 19.6 Weakly correlated
56 ZNF610 1 28.9 Weakly correlated
57 ZNF559 1 74.0 Weakly correlated
58 ZNF596 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 8 19.6 Weakly correlated
2 ZNF263 6 180.0 Weakly correlated
3 ZIM3 3 87.0 Moderately correlated
4 ZNF479 3 6.4 Weakly correlated
5 ZNF597 3 94.0 Moderately correlated
6 ZNF257 3 0.0 Weakly correlated
7 ZNF793 2 99.0 Highly correlated
8 ZNF705D 2 28.9 Weakly correlated
9 ZNF75D 2 94.0 Moderately correlated
10 ZNF705B 2 28.9 Weakly correlated
11 ZNF429 2 28.9 Weakly correlated
12 ZFP37 1 99.0 Highly correlated
13 ZNF506 1 28.9 Weakly correlated
14 ZNF101 1 43.0 Weakly correlated
15 ZNF251 1 94.0 Moderately correlated
16 ZNF735 1 28.9 Weakly correlated
17 ZNF382 1 99.0 Highly correlated
18 ZNF680 1 28.9 Weakly correlated
19 ZNF320 1 28.9 Weakly correlated
20 ZNF596 1 94.0 Moderately correlated
21 ZNF554 1 99.0 Highly correlated
22 ZNF468 1 28.9 Weakly correlated
23 ZNF92 1 28.9 Weakly correlated
24 ZNF723 1 15.2 Weakly correlated
25 ZNF679 1 28.9 Weakly correlated
26 ZNF485 1 94.0 Moderately correlated
27 ZNF701 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated